Recent changes to Home

Home modified by Jin Yu

Jin Yu — Wed, 17 Jul 2013 17:30:56 -0000

--- v19
+++ v20
@@ -7,4 +7,4 @@
 For usage info, please refer [Best practices with SNPTools]
 For our best practices of integrated SNP analysis, please refer [Best practices of integrated SNP analysis]

-
+We also tried to setup SNPTools on Amazon cloud, which greatly speedup our processing of 1000 Genomes Phase3 data. For the instruction, please refer [Run SNPTools on Amazon Cloud]

WikiPage Home modified by Jin Yu

Jin Yu — Fri, 08 Mar 2013 16:30:39 -0000

--- v18
+++ v19
@@ -7,5 +7,4 @@
 For usage info, please refer [Best practices with SNPTools]
 For our best practices of integrated SNP analysis, please refer [Best practices of integrated SNP analysis]

-You can check the analyses results of the latest application of SNPTools on 1000 Genomes data in the [slides](https://docs.google.com/file/d/0B1IHIU2I-1F8SWxzVWlpQUhtS3M/edit?usp=sharing)

WikiPage Home modified by Jin Yu

Jin Yu — Wed, 06 Mar 2013 16:02:20 -0000

--- v17
+++ v18
@@ -5,21 +5,7 @@
 Wang, Y., Lu, J., Yu, J., Gibbs, R. a, & Yu, F. (2013). An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data. Genome research. doi:10.1101/gr.146084.112 [abstract](http://genome.cshlp.org/content/early/2013/01/04/gr.146084.112.abstract)

 For usage info, please refer [Best practices with SNPTools]
-For our best practices of integrated SNP-analysis, please refer [Best practices of integrated SNP analysis]
+For our best practices of integrated SNP analysis, please refer [Best practices of integrated SNP analysis]

-You can check the analyses results of the latest implementation of SNPTools on 1000 Genomes data in the [slides](https://docs.google.com/file/d/0B1IHIU2I-1F8SWxzVWlpQUhtS3M/edit?usp=sharing)
+You can check the analyses results of the latest application of SNPTools on 1000 Genomes data in the [slides](https://docs.google.com/file/d/0B1IHIU2I-1F8SWxzVWlpQUhtS3M/edit?usp=sharing)

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-

WikiPage Home modified by Jin Yu

Jin Yu — Tue, 05 Mar 2013 17:31:33 -0000

--- v16
+++ v17
@@ -8,3 +8,18 @@
 For our best practices of integrated SNP-analysis, please refer [Best practices of integrated SNP analysis]

 You can check the analyses results of the latest implementation of SNPTools on 1000 Genomes data in the [slides](https://docs.google.com/file/d/0B1IHIU2I-1F8SWxzVWlpQUhtS3M/edit?usp=sharing)
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+
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WikiPage Home modified by Jin Yu

Jin Yu — Mon, 04 Mar 2013 20:55:35 -0000

--- v15
+++ v16
@@ -7,4 +7,4 @@
 For usage info, please refer [Best practices with SNPTools]
 For our best practices of integrated SNP-analysis, please refer [Best practices of integrated SNP analysis]

-The latest analyses results of SNPTools on 1000 Genomes data is at [slides](https://docs.google.com/file/d/0B1IHIU2I-1F8SWxzVWlpQUhtS3M/edit?usp=sharing)
+You can check the analyses results of the latest implementation of SNPTools on 1000 Genomes data in the [slides](https://docs.google.com/file/d/0B1IHIU2I-1F8SWxzVWlpQUhtS3M/edit?usp=sharing)

WikiPage Home modified by Jin Yu

Jin Yu — Mon, 04 Mar 2013 20:54:02 -0000

--- v14
+++ v15
@@ -6,3 +6,5 @@

 For usage info, please refer [Best practices with SNPTools]
 For our best practices of integrated SNP-analysis, please refer [Best practices of integrated SNP analysis]
+
+The latest analyses results of SNPTools on 1000 Genomes data is at [slides](https://docs.google.com/file/d/0B1IHIU2I-1F8SWxzVWlpQUhtS3M/edit?usp=sharing)

WikiPage Home modified by Jin Yu

Jin Yu — Mon, 04 Mar 2013 20:48:09 -0000

--- v13
+++ v14
@@ -5,3 +5,4 @@
 Wang, Y., Lu, J., Yu, J., Gibbs, R. a, & Yu, F. (2013). An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data. Genome research. doi:10.1101/gr.146084.112 [abstract](http://genome.cshlp.org/content/early/2013/01/04/gr.146084.112.abstract)

 For usage info, please refer [Best practices with SNPTools]
+For our best practices of integrated SNP-analysis, please refer [Best practices of integrated SNP analysis]

WikiPage Home modified by Jin Yu

Jin Yu — Fri, 01 Feb 2013 19:03:41 -0000

--- v12
+++ v13
@@ -1,6 +1,6 @@
 SNPTools is a suite of tools that enables integrative SNP analysis in next generation sequencing data with large cohorts. It not only calls SNP in a population with high sensitivity and accuracy, but also employs a novel imputation engine to achieve highly accurate genotype calling and phasing in an efficient way.

-SNPTools paper is online at Genome Research in Jan, 2013 
+SNPTools paper is online at Genome Research in Jan, 2013:

 Wang, Y., Lu, J., Yu, J., Gibbs, R. a, & Yu, F. (2013). An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data. Genome research. doi:10.1101/gr.146084.112 [abstract](http://genome.cshlp.org/content/early/2013/01/04/gr.146084.112.abstract)

WikiPage Home modified by Jin Yu

Jin Yu — Fri, 01 Feb 2013 19:01:27 -0000

--- v11
+++ v12
@@ -1,6 +1,6 @@
 SNPTools is a suite of tools that enables integrative SNP analysis in next generation sequencing data with large cohorts. It not only calls SNP in a population with high sensitivity and accuracy, but also employs a novel imputation engine to achieve highly accurate genotype calling and phasing in an efficient way.

-SNPTools paper is now online at Genome Research Jan, 2013 
+SNPTools paper is online at Genome Research in Jan, 2013 

 Wang, Y., Lu, J., Yu, J., Gibbs, R. a, & Yu, F. (2013). An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data. Genome research. doi:10.1101/gr.146084.112 [abstract](http://genome.cshlp.org/content/early/2013/01/04/gr.146084.112.abstract)

WikiPage Home modified by Jin Yu

Jin Yu — Fri, 01 Feb 2013 18:52:35 -0000

--- v10
+++ v11
@@ -2,6 +2,6 @@

 SNPTools paper is now online at Genome Research Jan, 2013 

-"An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data"  [abstract](http://genome.cshlp.org/content/early/2013/01/04/gr.146084.112.abstract)
+Wang, Y., Lu, J., Yu, J., Gibbs, R. a, & Yu, F. (2013). An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data. Genome research. doi:10.1101/gr.146084.112 [abstract](http://genome.cshlp.org/content/early/2013/01/04/gr.146084.112.abstract)

 For usage info, please refer [Best practices with SNPTools]