MOVED TO GITHUB: https://github.com/noporpoise/seq-align
An implementation of the Smith-Waterman local sequence alignment algorithm.
See our sister project global alignment using Needleman-Wunsch:
http://sourceforge.net/projects/needlemanwunsch/
Features
- Affine gap penalties
- Coloured ouput
- Reads FASTA, FASTQ and plain sequence files (inc. gzip'ed files)
- Preset DNA/Protein substitution matrices (PAM/BLOSUM etc)
- Can load penalty substitution matrices
- Portable C code that can be used in other bioinformatics projects
Categories
Bio-InformaticsLicense
GNU General Public License version 3.0 (GPLv3)Follow SmithWaterman
You Might Also Like
Our computer monitoring software allows employees, field contractors, and freelancers to manually clock in when they begin working on an assignment. The application will take screenshots randomly or at set intervals, which allows employers to observe the work process. The application only tracks activity when the employee is clocked in. No spying, only transparency.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of SmithWaterman!