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Does scoring function involve temperature?

2022-08-22
2022-08-23
  • Anna Cooper

    Anna Cooper - 2022-08-22

    What's the default temperature when running smina dockings?

     
  • David Koes

    David Koes - 2022-08-22

    There isn't one. This isn't a molecular simulation.

     
    • Anna Cooper

      Anna Cooper - 2022-08-23

      Thanks! However, does it means that smina can't convert binding affinity to dissociation constant using formula as following: Ki =Kd = exp(δG/(R * T))

       
  • David Koes

    David Koes - 2022-08-23

    Since the score is calibrated to be a delta G, you can certainly apply that formula, in which case you are picking the temperature.

     

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