slurm-roll / Discussion / General Discussion: A lots of error message when reinstalling slurm roll

A lots of error message when reinstalling slurm roll

Forum: General Discussion

Creator: Christophe Guilbert

Created: 2018-03-22

Updated: 2018-03-22

Christophe Guilbert - 2018-03-22

Hi , I have a lots of error trying to reinstall slurm , see bellow , could you please tell me if its normal ?

rocks run roll slurm|sh
Loaded plugins: fastestmirror, langpacks
Cleaning repos: Rocks-7.0
Cleaning up everything
Maybe you want: rm -rf /var/cache/yum, to also free up space taken by orphaned data from disabled or removed repos
Cleaning up list of fastest mirrors
Loaded plugins: fastestmirror, langpacks
Rocks-7.0 | 3.6 kB 00:00:00
(1/2): Rocks-7.0/primary_db | 5.8 MB 00:00:00
(2/2): Rocks-7.0/group_gz | 156 kB 00:00:00
Determining fastest mirrors
Package hwloc-1.11.2-2.el7.x86_64 already installed and latest version
Package 1:mariadb-5.5.56-2.el7.x86_64 already installed and latest version
Package 1:mariadb-5.5.56-2.el7.x86_64 already installed and latest version
Package 1:mariadb-server-5.5.56-2.el7.x86_64 already installed and latest version
Package munge-0.5.13-3.el7.centos.x86_64 already installed and latest version
Package munge-libs-0.5.13-3.el7.centos.x86_64 already installed and latest version
Package pdsh-2.26-1.x86_64 already installed and latest version
Package rocks-command-slurm-7.0.0-17.02.07.08.x86_64 already installed and latest version
Package slurm-17.11.5-1.el7.centos.x86_64 already installed and latest version
Package slurm-devel-17.11.5-1.el7.centos.x86_64 already installed and latest version
No package slurm-munge available.
Package slurm-pam_slurm-17.11.5-1.el7.centos.x86_64 already installed and latest version
Package slurm-perlapi-17.11.5-1.el7.centos.x86_64 already installed and latest version
No package slurm-plugins available.
Package slurm-rolldoc-7.0.0-17.11.5.x86_64 already installed and latest version
Package slurm-slurmctld-17.11.5-1.el7.centos.x86_64 already installed and latest version
Package slurm-slurmd-17.11.5-1.el7.centos.x86_64 already installed and latest version
Package slurm-slurmdbd-17.11.5-1.el7.centos.x86_64 already installed and latest version
No package slurm-sql available.
No package slurm-sql available.
Package slurm-torque-17.11.5-1.el7.centos.x86_64 already installed and latest version
Nothing to do
/bin/mkdir: cannot create directory '/etc/slurm': File exists
/bin/mkdir: cannot create directory '/var/spool/slurmd': File exists
/bin/mkdir: cannot create directory '/var/log/slurm': File exists
/bin/mkdir: cannot create directory '/var/spool/slurm.checkpoint': File exists
/bin/mkdir: cannot create directory '/etc/slurm': File exists
FILES += /etc/slurm/slurm.conf
FILES += /etc/slurm/head.conf
FILES += /etc/slurm/node.conf
FILES += /etc/slurm/parts.conf
FILES += /etc/slurm/topo.conf
FILES += /etc/slurm/cgroup.conf
FILES += /etc/slurm/gres.conf.1
FILES += /etc/slurm/gres.conf.2
FILES += /etc/slurm/gres.conf.3
FILES += /etc/slurm/gres.conf.4
ERROR 1007 (HY000) at line 1: Can't create database 'slurm_acct_db'; database exists
mkdir: cannot create directory '/var/spool/slurm.state': File exists
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurmdbd: DBD_MODIFY_QOS failure: No error
Error with request: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurmdbd: DBD_GET_QOS failure: No error
sacctmgr: error: We need a qos list to translate
You gave a bad default qos 'normal'. Use 'list qos' to get complete list.
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurmdbd: DBD_MODIFY_QOS failure: No error
Error with request: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurmdbd: DBD_GET_CLUSTERS failure: No error
Problem getting clusters from database. Contact your admin.
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurmdbd: DBD_MODIFY_QOS failure: No error
Error with request: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
sacctmgr: error: slurmdbd: DBD_GET_CLUSTERS failure: No error
Problem getting clusters from database. Contact your admin.

WARNING: The command:

sacctmgr -i create cluster jcluster

failed. Please run this command again

ERROR 1008 (HY000) at line 1: Can't drop database 'test'; database doesn't exist

Thanks

Chris

If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
- Werner Saar - 2018-03-22
  
  The command:
  
  rocks run roll slurm|sh
  
  should only be run once at the first install time.
  A second run will fail.
  
  On 03/22/2018 04:59 AM, Christophe Guilbert wrote:
  
  Hi , I have a lots of error trying to reinstall slurm , see bellow , could you please tell me if its normal ?
  
  rocks run roll slurm|sh
  Loaded plugins: fastestmirror, langpacks
  Cleaning repos: Rocks-7.0
  Cleaning up everything
  Maybe you want: rm -rf /var/cache/yum, to also free up space taken by orphaned data from disabled or removed repos
  Cleaning up list of fastest mirrors
  Loaded plugins: fastestmirror, langpacks
  Rocks-7.0 | 3.6 kB 00:00:00
  (1/2): Rocks-7.0/primary_db | 5.8 MB 00:00:00
  (2/2): Rocks-7.0/group_gz | 156 kB 00:00:00
  Determining fastest mirrors
  Package hwloc-1.11.2-2.el7.x86_64 already installed and latest version
  Package 1:mariadb-5.5.56-2.el7.x86_64 already installed and latest version
  Package 1:mariadb-5.5.56-2.el7.x86_64 already installed and latest version
  Package 1:mariadb-server-5.5.56-2.el7.x86_64 already installed and latest version
  Package munge-0.5.13-3.el7.centos.x86_64 already installed and latest version
  Package munge-libs-0.5.13-3.el7.centos.x86_64 already installed and latest version
  Package pdsh-2.26-1.x86_64 already installed and latest version
  Package rocks-command-slurm-7.0.0-17.02.07.08.x86_64 already installed and latest version
  Package slurm-17.11.5-1.el7.centos.x86_64 already installed and latest version
  Package slurm-devel-17.11.5-1.el7.centos.x86_64 already installed and latest version
  No package slurm-munge available.
  Package slurm-pam_slurm-17.11.5-1.el7.centos.x86_64 already installed and latest version
  Package slurm-perlapi-17.11.5-1.el7.centos.x86_64 already installed and latest version
  No package slurm-plugins available.
  Package slurm-rolldoc-7.0.0-17.11.5.x86_64 already installed and latest version
  Package slurm-slurmctld-17.11.5-1.el7.centos.x86_64 already installed and latest version
  Package slurm-slurmd-17.11.5-1.el7.centos.x86_64 already installed and latest version
  Package slurm-slurmdbd-17.11.5-1.el7.centos.x86_64 already installed and latest version
  No package slurm-sql available.
  No package slurm-sql available.
  Package slurm-torque-17.11.5-1.el7.centos.x86_64 already installed and latest version
  Nothing to do
  /bin/mkdir: cannot create directory '/etc/slurm': File exists
  /bin/mkdir: cannot create directory '/var/spool/slurmd': File exists
  /bin/mkdir: cannot create directory '/var/log/slurm': File exists
  /bin/mkdir: cannot create directory '/var/spool/slurm.checkpoint': File exists
  /bin/mkdir: cannot create directory '/etc/slurm': File exists
  FILES += /etc/slurm/slurm.conf
  FILES += /etc/slurm/head.conf
  FILES += /etc/slurm/node.conf
  FILES += /etc/slurm/parts.conf
  FILES += /etc/slurm/topo.conf
  FILES += /etc/slurm/cgroup.conf
  FILES += /etc/slurm/gres.conf.1
  FILES += /etc/slurm/gres.conf.2
  FILES += /etc/slurm/gres.conf.3
  FILES += /etc/slurm/gres.conf.4
  ERROR 1007 (HY000) at line 1: Can't create database 'slurm_acct_db'; database exists
  mkdir: cannot create directory '/var/spool/slurm.state': File exists
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurmdbd: DBD_MODIFY_QOS failure: No error
  Error with request: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurmdbd: DBD_GET_QOS failure: No error
  sacctmgr: error: We need a qos list to translate
  You gave a bad default qos 'normal'. Use 'list qos' to get complete list.
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurmdbd: DBD_MODIFY_QOS failure: No error
  Error with request: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurmdbd: DBD_GET_CLUSTERS failure: No error
  Problem getting clusters from database. Contact your admin.
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurmdbd: DBD_MODIFY_QOS failure: No error
  Error with request: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurm_persist_conn_open: Something happened with the receiving/processing of the persistent connection init message to jcluster:6819: Unable to connect to database
  sacctmgr: error: slurmdbd: Sending PersistInit msg: No error
  sacctmgr: error: slurmdbd: DBD_GET_CLUSTERS failure: No error
  Problem getting clusters from database. Contact your admin.
  
  WARNING: The command:
  
  sacctmgr -i create cluster jcluster
  
  failed. Please run this command again
  
  ERROR 1008 (HY000) at line 1: Can't drop database 'test'; database doesn't exist
  
  Thanks
  
  Chris
  
  A lots of error message when reinstalling slurm roll
  
  Sent from sourceforge.net because you indicated interest in https://sourceforge.net/p/slurm-roll/discussion/general/
  
  To unsubscribe from further messages, please visit https://sourceforge.net/auth/subscriptions/
  
  If you would like to refer to this comment somewhere else in this project, copy and paste the following link:

A lots of error message when reinstalling slurm roll

Slurm Resource Manager for Rocks Clusters

Forums

Help

A lots of error message when reinstalling slurm roll

WARNING: The command:

sacctmgr -i create cluster jcluster

failed. Please run this command again

WARNING: The command:

sacctmgr -i create cluster jcluster

failed. Please run this command again

A lots of error message when reinstalling slurm roll

Slurm Resource Manager for Rocks Clusters

Forums

Help

A lots of error message when reinstalling slurm roll document.SUBSCRIPTION_OPTIONS = { "thing": "topic", "subscribed": false, "url": "subscribe", "icon": { "css": "fa fa-envelope-o" } };

WARNING: The command:

sacctmgr -i create cluster jcluster

failed. Please run this command again

WARNING: The command:

sacctmgr -i create cluster jcluster

failed. Please run this command again

A lots of error message when reinstalling slurm roll