For those interested (probably not most of you), there is a new release of the SkimNotes framework and command line tool, version 1.2.5. It can be downloaded from the Skim home page.
This release adds support for an alignment property for text notes and an interior color property for line notes. It also adds a new "skimpdf" command line tool that allows you to manipulate PDF files, performing actions like converting and embedding notes as well as merging and splitting PDFs with attached notes from the command line.
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