SIVIC / Tickets / #240 13C 1D DNP data

Anonymous - 2018-03-08

Hi,

Yes, depending on the input format. If you have images representing the metabolite quantities in DICOM format for both metabolites at all times, then you can use the command line tool svk_met_kinetics. Does that work for you? What format is your data in? If you are starting with dynamic spectra there are tools for creating the time series of metabolite maps for this.

thanks,

-Jason

Jason Crane, PhD
Department of Radiology and Biomedical Imaging
UCSF Radiology MC 2532
Byers Hall 301A
CA Institute for Quantitative Biomedical Research
1700 4th St.
San Francisco, CA 94158-2330
e-mail: jason.crane@ucsf.edu
tel: 415.514.4426

From: Ticket 240 240@tickets.sivic.p.re.sourceforge.net
Sent: Wednesday, March 7, 2018 6:15 PM
To: Ticket 240
Subject: [sivic:tickets] #240 13C 1D DNP data

[tickets:#240]https://sourceforge.net/p/sivic/tickets/240/ 13C 1D DNP data

Status: new
Milestone: Hyperpolarized C13 - raw data readers
Created: Thu Mar 08, 2018 02:15 AM UTC by Anonymous
Last Updated: Thu Mar 08, 2018 02:15 AM UTC
Owner: nobody

Hi
Is there anyway, i can load one (1D) spectroscopic 13C DNP data to determine kinetics for pyruvate to lactate conversion using SIVIC? Please let me know your suggestions,
Thanks
Ned

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- Anonymous - 2018-03-09
  
  Hi Jason
  Thank you for your reply. My dynamic data is in fid format ( agilent or varian format). I just want to do simple kinetics (2 compartment) based on 1D data.
  Thanks
  Ned
  
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jasonc - 2018-03-09

Hi Ned,
We do support fid and procpar files for some sequences from Varian/Agilent imaging scanners. However if your data isn't imaging data, i.e. no spatial localization parameters, then it might require a little kludging for example to represent it as a single voxel data set in order to use the tools. Have you tried loading your fid file in the sivic GUI?
thanks,
-Jason

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Anonymous - 2018-04-11

Hi Jason
I tried loading the fid (1D NMR, spectroscopic data, not a imaging data) files in SIVIC, unfortunates it does not work and it crashes. It does not recongnize the file format.
Thanks
Ned

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- Anonymous - 2018-04-11
  
  Hi Ned,
  
  What is the data format? Which vendor? We only support imaging formats, though single voxel will work if it's in an imaging context. There may be simple workarounds, but we'd need to see your data to recommend something. If you want to e-mail a deidentified example to me directly we can have a look.
  
  Thanks,
  
  -Jason
  
  From: noreply@sourceforge.net noreply@sourceforge.net
  Sent: Wednesday, April 11, 2018 10:33:16 AM
  To: [sivic:tickets]
  Subject: [sivic:tickets] #240 13C 1D DNP data
  
  Hi Jason
  I tried loading the fid (1D NMR, spectroscopic data, not a imaging data) files in SIVIC, unfortunates it does not work and it crashes. It does not recongnize the file format.
  Thanks
  Ned
  
  [tickets:#240]https://sourceforge.net/p/sivic/tickets/240/ 13C 1D DNP data
  
  Status: new
  Milestone: Hyperpolarized C13 - raw data readers
  Created: Thu Mar 08, 2018 02:15 AM UTC by Anonymous
  Last Updated: Wed Apr 11, 2018 03:28 PM UTC
  Owner: nobody
  
  Hi
  Is there anyway, i can load one (1D) spectroscopic 13C DNP data to determine kinetics for pyruvate to lactate conversion using SIVIC? Please let me know your suggestions,
  Thanks
  Ned
  
  Sent from sourceforge.net because you indicated interest in https://sourceforge.net/p/sivic/tickets/240/
  
  To unsubscribe from further messages, please visit https://sourceforge.net/auth/subscriptions/
  
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Anonymous - 2018-04-12

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#240 13C 1D DNP data

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