sirfast Code

Mapper for Complete Genomics

Brought to you by: calkan, fhach

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File	Date	Author	Commit
CG_generator	2014-04-20	Donghyuk Lee	[12b7a8] added functionality for fractions of reads to h...
CG_generator_2nd	2014-07-18	Donghyuk Lee	[d852c7] fix bugs
OMP	2013-09-16	Can Alkan	[954db5] mapq fix
ReadSlice	2013-09-16	Can Alkan	[954db5] mapq fix
CommandLineParser.c	2014-07-15	Donghyuk Lee	[302526] support 2nd format 10-9-N-10
CommandLineParser.h	2012-09-28	Can Alkan	[b4aeb2] initialization
Common.c	2012-11-12	Can Alkan	[503d9e] port to mrfast 2.5.0.1 codebase
Common.h	2014-07-15	Donghyuk Lee	[302526] support 2nd format 10-9-N-10
HashTable.c	2012-09-28	Can Alkan	[b4aeb2] initialization
HashTable.h	2012-09-28	Can Alkan	[b4aeb2] initialization
Makefile	2012-11-12	Can Alkan	[503d9e] port to mrfast 2.5.0.1 codebase
Output.c	2014-07-25	Donghyuk Lee	[1cfaf5] fixing bug
Output.h	2012-11-12	Can Alkan	[503d9e] port to mrfast 2.5.0.1 codebase
Reads.c	2014-07-25	Donghyuk Lee	[2ea146] minor change
Reads.h	2012-12-28	FARHAD I. HORMOZDIARI	[17f188] Pair-end is working with some minor bugs
RefGenome.c	2012-11-12	Can Alkan	[503d9e] port to mrfast 2.5.0.1 codebase
RefGenome.h	2012-11-12	Can Alkan	[503d9e] port to mrfast 2.5.0.1 codebase
SirFAST.c	2014-07-25	Donghyuk Lee	[1cfaf5] fixing bug
SirFAST.h	2014-07-15	Donghyuk Lee	[302526] support 2nd format 10-9-N-10
baseFAST.c	2013-04-25	FARHAD I. HORMOZDIARI	[6af6f4] fix memory leak introduced by Dongh
reads_2nd_sample	2014-07-15	Donghyuk Lee	[302526] support 2nd format 10-9-N-10
run.sh	2014-07-15	Donghyuk Lee	[302526] support 2nd format 10-9-N-10
test.c	2014-06-15	Donghyuk Lee	[f46334] test