Menu ▾ ▴

Read Result error

General Discussion
medhat
2015-06-15
2015-08-17

  • medhat

    medhat - 2015-06-15

    I have these results after using this command ;

    ./SInC_readGen -C 5 -T 10 -R 100 ./genome.fa_2_300_50_5.0_100.fq ./100_bp_read_1_profile.txt ./100_bp_read_2_profile.txt

    @GC@=DGFE!AD?DDCDDGDBDDBCGBDDDD>DD<cca>D:DC@EDD<d>D_1118_1514_10_1_0
    CGAAAACGGGTGTCGGGTGCATACA+@@CFDFFFHHFDGGBCIG!IG!!FF!!)IG!!!<=HD!CECD!I!!B!IE!!DEBG?!!FFCDD!!CD;ACCCA
    +
    @@CDD?DDHGF?GB!FI!IG!!III?!!IIHB!GDDHIIBB!FIIHEI>DHDGIFGA?@><<DDFA)CA;!FDEHBEDD@BDEBDD@:DCACDBB5B<c>
    @CF!>DFFD9D=DCDD?DC@DC@DCCCDDBD_21733_22113_10_1_0
    TCCTTATGTTATTAAGCACAAGAAAGGAAAAGAGAA+@;@FFD?DG;HFHAHIIHF!IGEI!A!!I?EGI5EFH!DG!CF@HCHE8GCGDIDG!DDHF!I
    +
    CCCDF?FFHH<H?I!!I!I@IG!!DIGGD!!EEIIE9II!CIFDHFI!IIE=F!DC!DBDFD!@FIE(ID?CDF9AD7DD<CHFDDDD@ECDCDDD2CDD
    @DCDDDDCDDDDBAD_36831_37273_10_1_0
    GCCCCGCCACCATCTCCCGTTTGATCATGCCACAAACCGAGTCAACATCATTTCCTTATTTTTCTCCTTCGGT+CC@FFFEFFHHHHI!!IHH!I!!EHI
    +
    CCCDFFFFH@FCHIHED!!EGDFIC!HHIF!IGH!5F!C>!GGH<B@!IHHI@CFHIDH!@IIHH;CDBFHDDDC:>5CBDA?>F;>;D?ED?>B?C
    @@DF@9DDDECDDCDCC_51033_51444_10_1_0
    FHG!8B!IHG!!IDEF9DGGGDIIBHA!B!5DI=DE?HD!DDDD<@IBDDC?BCD8D:DDC8DD9CCD@10_223996_224352_10_266_1GCACCA
    +    </c></d></cca>

    any idea?!

     

  • Saurabh Gupta

    Saurabh Gupta - 2015-08-17

    Hi, sorry for the late reply. Input to SInC_readGen is a "fasta" file, it seems you are giving a "fastq" file instead.

     

Log in to post a comment.