Recent changes to Validate_unit_tests

Validate_unit_tests modified by Robert Kofler

Robert Kofler — Tue, 25 Jul 2017 13:43:00 -0000

--- v4
+++ v5
@@ -1,7 +1,7 @@
 [TOC]

 # Introduction - unit tests
-To ensure proper execution of our DSL for describing TE sequences we implemented unit tests. Unit tests enable automated testing of the code. The code is treated as a black box where the input and the expected output is provided. A unit test just checks wheter the observed output agrees with the expected output.
+To ensure proper execution of our DSL we implemented unit tests. Unit tests enable automated testing of the code. The code is treated as a black box where the input and the expected output is provided. A unit test just checks wheter the observed output agrees with the expected output.

 Following an example of a unit test:
@@ -15,6 +15,9 @@
 ~~~~~
 The sequence *a* is *AAATTTAAA*. The unit test ensure that deletion of the intermediate three bases (*a\[4..6\]*) results in the sequence *AAAAAA*
 ## Run unit tests
+
+To run the Unit-tests and thus ensure proper execution of our DSL use the following commands:
+
 ~~~~~
 cd unittests
 python test-TEdefinitionlanguage.py

Validate_unit_tests modified by Robert Kofler

Robert Kofler — Fri, 07 Jul 2017 16:28:56 -0000

--- v3
+++ v4
@@ -13,8 +13,7 @@
           self.assertEqual(tt.getTESequence("a").sequence,"AAATTTAAA")
           self.assertEqual(tt.getTESequence("d").sequence,"AAAAAA")
 ~~~~~
-
-
+The sequence *a* is *AAATTTAAA*. The unit test ensure that deletion of the intermediate three bases (*a\[4..6\]*) results in the sequence *AAAAAA*
 ## Run unit tests
 ~~~~~
 cd unittests

Validate_unit_tests modified by Robert Kofler

Robert Kofler — Fri, 07 Jul 2017 16:27:13 -0000

--- v2
+++ v3
@@ -6,6 +6,7 @@

 Following an example of a unit test:
 ~~~~~
+:::python
 def test_singledeletion(self):
           tt=self.tt
           tt.addDefinition("d=a[4..6]")

Validate_unit_tests modified by Robert Kofler

Robert Kofler — Fri, 07 Jul 2017 16:26:40 -0000

--- v1
+++ v2
@@ -2,6 +2,16 @@

 # Introduction - unit tests
 To ensure proper execution of our DSL for describing TE sequences we implemented unit tests. Unit tests enable automated testing of the code. The code is treated as a black box where the input and the expected output is provided. A unit test just checks wheter the observed output agrees with the expected output.
+
+
+Following an example of a unit test:
+~~~~~
+def test_singledeletion(self):
+          tt=self.tt
+          tt.addDefinition("d=a[4..6]")
+          self.assertEqual(tt.getTESequence("a").sequence,"AAATTTAAA")
+          self.assertEqual(tt.getTESequence("d").sequence,"AAAAAA")
+~~~~~

 ## Run unit tests

Validate_unit_tests modified by Robert Kofler

Robert Kofler — Fri, 07 Jul 2017 16:23:51 -0000

Introduction - unit tests
- Run unit tests

Introduction - unit tests

To ensure proper execution of our DSL for describing TE sequences we implemented unit tests. Unit tests enable automated testing of the code. The code is treated as a black box where the input and the expected output is provided. A unit test just checks wheter the observed output agrees with the expected output.

Run unit tests

cd unittests
python test-TEdefinitionlanguage.py

you should get something like this:

Ran 33 tests in 0.007s

OK

This indicates that the DSL is executed properly