Merge remote-tracking branch 'origin/libshore' ...
Merge remote-tracking branch 'origin/libshore'
Fix a function naming conflict on some platforms
Merge commit '784eac5cf03909f71bc3b4b9bea3c8c1f...
Merge commit '784eac5cf03909f71bc3b4b9bea3c8c1f...
Line sorter: handle UTF-8 chars in files
Add 'libshore/' from commit '3fcc6d549903ca8622...
Submodule removed
Fix Makefile.am
Fix Makefile.am
Merge branch 'shore'
Add 'libshore/' from commit '3fcc6d549903ca8622...
Submodule removed
Fixes for GCC6 & GSL2
Compile GSL dependent parts to separate .so
FIX suffix index hashing
license headers updated, bump version
configure: add --without-gsl
Revert file permission changes from 9251b0bee12...
Revert file permission changes from 9251b0bee12...
Revert file permission changes from 9251b0bee12...
Revert file permission changes from 9251b0bee12...
Fix 'make dist' and revision number
configure: add --without-gsl
add reset function for shore sources
fix: dp_mapping_writer, allow output without qu...
add const to method declaration
split into subprojects
split into subprojects
split into subprojects
adjusted SAM_FLAG_MAX_VALUE for new SAM spec
adjusted SAM_FLAG_MAX_VALUE for new SAM spec
fixed vcf header
qIndel genotype qualities and VCF header added
new SAM format changes integrated in converter,...
qIndel
polished (=shortened) shore methyl output; exte...
qIndel release version