Simple High-throughut Annotation Pipeline

SHAP

Simple High-throughput Annotation Pipeline

Welcome to the SHAP SourceForge project.

SHAP is a genomic annotation system designed to deal with the large size of data sets generated by next-gen sequencing technologies such as the 454 from Life Sciences. In addition, the project includes a Java based web application for user-friendly retrieval of subsequent results.

Demonstration System

We have provided SHAP in demonstration form. As a demonstration, it contains a small suite of underlying analysis tools, some small reference databases and an example dataset.
The demo comes in two forms.

A. Virtual Machine

You can trial it as a fully configured server on Amazon EC2 (AMI name: shap-1.1.0-demo).

B. Tarball

Download the tarball in the files section. There is a dependency on PostgreSQL and an J2EE application server to play with the web application.

Please consult the wiki for further information.