Re: [sfscode-users] bacterial recombination

[Ryan H. <rh...@gm...>]

Hi Tatum,

Can you remind me what parameters you are using for the two sets of
simulations you mention here?

Thanks,

Ryan

On Mon, Sep 14, 2015 at 3:20 PM, Tatum Mortimer <tmo...@wi...> wrote:

> Hi Ryan,
>
> This reply is regarding a previous question about simulating bacterial
> recombination. I wasn't a member of the mailing list then, and I can't
> figure out how to respond to that message specifically. I've recently been
> using SFS_CODE to simulate bacterial populations, including gene
> conversion. When I run a recombination detection program (BRATNextGen) on
> the results of the simulation, tracts of similar size to my input on the
> command line are detected. I also double checked this by running a strictly
> clonal simulation, and BRATNextGen detected no recombination. In your
> previous answer, you said that gene conversion only works in diploids and
> tetraploids. However, it appears that gene conversion is occurring in my
> haploid simulations.
>
> Best,
> Tatum
>
>
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