[sfscode-users] convertSFS_CODE did not read Nc correctly

[Shujun O. <ous...@ms...>]

Hi Ryan,

 

I want to convert the SFS_CODE result to fasta and SFS by using
convertSFS_CODE and I received the following error msg:

         ./convertSFS_CODE test4.td3selfN2kL5k5.sim -s F
test4.td3selfN2kL5k5.sfs -a F test4.td3selfN2kL5k5.fa

         converSFS_CODE error: did not read Nc correctly on line 13

 

I am using the 2014-07-20 version, and the command line:

         ./sfs_code 4 1 -t 0.003 -N 2000 -r 0.00032 -L 5 5000 -i 0.2 -Ti 0
0.99 -n 50 -w 0 -TD 0 0 1 0.05 1500 -Tw 1 1 -TD 1 0 2 0.05 1500 -Tw 2 2 -TD
2 0 3 0.05 1500 -Tw 3 3 -TE 3 -o test4.td3selfN2kL5k5.sim

in order to simulate time dependent domestication events.

 

I have attached the output file in this email. If you found any irrational
setting in my command, please point it out. Thank you very much!

 

Regards,

Shujun

_________________---------_____________

Shujun Ou

PhD Graduate Research Assistant

Department of Horticulture

Michigan State University

Plant & Soil Sciences Building, Rm A334

East Lansing, MI 48824

Phone: (517) 355-5191 x 1383

Email: ous...@ms... <mailto:%20o...@ms...> 

http://www.hrt.msu.edu/shujun-ou