[sfscode-updates] SFS_CODE update

[Ryan H. <rhe...@uc...>]

Hello SFS_CODEers,

Several new features (some long awaited) to announce!!

1)  --admixture (-TJ)
You can now directly simulate admixture!  The options are extremely
flexible, allowing for an arbitrary number of ancestral populations,
differing representation of males and females from ancestral populations,
etc.

2)  --mutation
Introduce a new mutation at any time, with a user-specified selection
coefficient!
3)  --trackAncestry
This allows you to know the true genetic ancestry of individuals at every
site when you are simulating with migration or admixture.  Very handy to
know the exact widths and locations of each admixture block.
4)  --trackTrajectory
Follow the frequency trajectory of a mutation generation by generation.
 This option can also be used to specify the final frequency of a derived
allele at the time of sampling, and automatically restart the simulation if
all the mutations you are tracking are fixed or lost.

Updates:
I have fixed the way that convertSFS_CODE creates ms-style output so that
the output can be used directly with sample_stats (supplied with the ms
download).


Download the new version, and try out the new features:
http://sfscode.sourceforge.net/