Re: [Semediawiki-user] SMW install failing at Database Setup (dbuser and pw are correct)

[John Major <john.e.major.jr@gm...>]

For some reason the domain was not localhost but localhost.localdomain
(and that user was not correctly permissioned).

I modified the user and everything is working.

john


On Wed, Jan 14, 2009 at 1:12 PM, Brian Osborne <bosborne11@...> wrote:
> John,
> The user has all the right permissions? Something like:
>
> mysql> GRANT CREATE TEMPORARY
> TABLES,SELECT,INSERT,UPDATE,DELETE,CREATE,DROP,ALTER,CREATE VIEW,INDEX
>       -> on wikidb.*
>       -> to wikiuser@...
>       -> identified by 'wik';
>
>
> Brian O.
>
> On Jan 14o, 2009, at 4:01 PM, John Major wrote:
>
> Hello-
>
> I am installing SMW on an Ubuntu(heron) Linux box, and am having
> trouble initializing the database from the SMWAdmin page...
>
> According to the Version page, all required s/w is properly installed
> in MediaWiki:
> MySQL 5.0.51a-3ubuntu5.3
> PHP 5.2.4-2ubuntu5.4
>
> Mediawiki v 1.13.3
> ParserFunctions v 1.1.1
> Semantic MediaWiki v 1.4.1
> StringFunctions v 2.0.3
>
> The database user and p/w are correct, and MediaWiki was able to
> install with no problem.
>
> When I run the SMWAdmin 'Initialize or upgrade tables' tool, I get the
> following output:
>
> Setting up standard database configuration for SMW...
> Selected storage engine is "SMWSQLStore2" (or an extension thereof)
> Setting up table 'SW_smw_ids' ...
>
> And it hangs there and never progresses.
> If I rerun the script, the same thing happens.
>
> Any help in getting this last hurdle overcome is greatly appreciated.
>
> Cheers,
> John
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.
> http://p.sf.net/sfu/sf-spreadtheword
> _______________________________________________
> Semediawiki-user mailing list
> Semediawiki-user@...
> https://lists.sourceforge.net/lists/listinfo/semediawiki-user
>
>

Re: [Semediawiki-user] Problem with [ ] brackets in properties values

[Yaron Koren <yaron57@gm...>]

If you're still having this problem, you can use the #set function, as
discussed recently on this list.
-Yaron

On Mon, Jan 12, 2009 at 6:23 AM, Venicewiki <info@...> wrote:

> As another user stated, after upgrading from Semantic Mediawiki 1.2 to 1.3
> the brackets in properties values are not parsed correctly.
>
> For example [[Description::this is a [[link]] ]] renders
> [[Description::this is a link
>
> Any fix?
>
> Thank you
>
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.
> http://p.sf.net/sfu/sf-spreadtheword
> _______________________________________________
> Semediawiki-user mailing list
> Semediawiki-user@...
> https://lists.sourceforge.net/lists/listinfo/semediawiki-user
>
>

Re: [Semediawiki-user] SMW install failing at Database Setup (dbuser and pw are correct)

[Brian Osborne <bosborne11@ve...>]

John,

The user has all the right permissions? Something like:

mysql> GRANT CREATE TEMPORARY  
TABLES,SELECT,INSERT,UPDATE,DELETE,CREATE,DROP,ALTER,CREATE VIEW,INDEX
       -> on wikidb.*
       -> to wikiuser@...
       -> identified by 'wik';


Brian O.


On Jan 14o, 2009, at 4:01 PM, John Major wrote:

> Hello-
>
> I am installing SMW on an Ubuntu(heron) Linux box, and am having
> trouble initializing the database from the SMWAdmin page...
>
> According to the Version page, all required s/w is properly installed
> in MediaWiki:
> MySQL 5.0.51a-3ubuntu5.3
> PHP 5.2.4-2ubuntu5.4
>
> Mediawiki v 1.13.3
> ParserFunctions v 1.1.1
> Semantic MediaWiki v 1.4.1
> StringFunctions v 2.0.3
>
> The database user and p/w are correct, and MediaWiki was able to
> install with no problem.
>
> When I run the SMWAdmin 'Initialize or upgrade tables' tool, I get the
> following output:
>
> Setting up standard database configuration for SMW...
> Selected storage engine is "SMWSQLStore2" (or an extension thereof)
> Setting up table 'SW_smw_ids' ...
>
> And it hangs there and never progresses.
> If I rerun the script, the same thing happens.
>
> Any help in getting this last hurdle overcome is greatly appreciated.
>
> Cheers,
> John
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.
> http://p.sf.net/sfu/sf-spreadtheword
> _______________________________________________
> Semediawiki-user mailing list
> Semediawiki-user@...
> https://lists.sourceforge.net/lists/listinfo/semediawiki-user

Re: [Semediawiki-user] SMW install failing at Database Setup (dbuser and pw are correct)

[Brian <Brian.Mingus@co...>]

In addition to any semantic mediawiki debugging tips you get, try 'show
processlist\G' in mysql

On Wed, Jan 14, 2009 at 2:01 PM, John Major <john.e.major.jr@...>wrote:

> Hello-
>
> I am installing SMW on an Ubuntu(heron) Linux box, and am having
> trouble initializing the database from the SMWAdmin page...
>
> According to the Version page, all required s/w is properly installed
> in MediaWiki:
> MySQL 5.0.51a-3ubuntu5.3
> PHP 5.2.4-2ubuntu5.4
>
> Mediawiki v 1.13.3
> ParserFunctions v 1.1.1
> Semantic MediaWiki v 1.4.1
> StringFunctions v 2.0.3
>
> The database user and p/w are correct, and MediaWiki was able to
> install with no problem.
>
> When I run the SMWAdmin 'Initialize or upgrade tables' tool, I get the
> following output:
>
> Setting up standard database configuration for SMW...
> Selected storage engine is "SMWSQLStore2" (or an extension thereof)
> Setting up table 'SW_smw_ids' ...
>
> And it hangs there and never progresses.
> If I rerun the script, the same thing happens.
>
> Any help in getting this last hurdle overcome is greatly appreciated.
>
> Cheers,
> John
>
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.
> http://p.sf.net/sfu/sf-spreadtheword
> _______________________________________________
> Semediawiki-user mailing list
> Semediawiki-user@...
> https://lists.sourceforge.net/lists/listinfo/semediawiki-user
>

[Semediawiki-user] SMW install failing at Database Setup (dbuser and pw are correct)

[John Major <john.e.major.jr@gm...>]

Hello-

I am installing SMW on an Ubuntu(heron) Linux box, and am having
trouble initializing the database from the SMWAdmin page...

According to the Version page, all required s/w is properly installed
in MediaWiki:
MySQL 5.0.51a-3ubuntu5.3
PHP 5.2.4-2ubuntu5.4

Mediawiki v 1.13.3
ParserFunctions v 1.1.1
Semantic MediaWiki v 1.4.1
StringFunctions v 2.0.3

The database user and p/w are correct, and MediaWiki was able to
install with no problem.

When I run the SMWAdmin 'Initialize or upgrade tables' tool, I get the
following output:

Setting up standard database configuration for SMW...
Selected storage engine is "SMWSQLStore2" (or an extension thereof)
Setting up table 'SW_smw_ids' ...

And it hangs there and never progresses.
If I rerun the script, the same thing happens.

Any help in getting this last hurdle overcome is greatly appreciated.

Cheers,
John

Re: [Semediawiki-user] Brackets in property values

[Brian <Brian.Mingus@co...>]

Thanks for the variety of suggestions! I think I will go with desperate.

I love the wiki hammer logo Daniel.


On Tue, Jan 13, 2009 at 7:42 PM, Daniel Friesen <dan_the_man@...>wrote:

>  ^_^ You know, if you were absolutely desperate for a set function that
> would also display:
>
> [[Template:Set]]
>
> {{#declare:{{{{1}}}=2}}{{{2}}}
>
> And then boom in your article:
>
> {{set|abstract|In the present study, a novel and exceptionally sensitive method
> of high-performance liquid chromatography coupled to coulometric detection,
> together with concentric dialysis probes, was exploited for an examination
> of the role of autoreceptors and heteroceptors in the modulation of
> dopamine, noradrenaline and serotonin levels in single samples of the
> frontal co...drenaline, dopamine and serotonin in each case, while
> stimulation of serotonin-1A receptors suppresses serotonin, yet facilitates
> noradrenaline and dopamine release. In addition, dopamine D2/D3
> autoreceptors restrain dopamine release while (terminal-localized)
> serotonin-1B receptors reduce serotonin release. Control of serotonin
> release is expressed phasically and that of noradrenaline and dopamine
> release tonically.}}
>
> ~Daniel Friesen (Dantman, Nadir-Seen-Fire) [http://nadir-seen-fire.com]
> -Nadir-Point (http://nadir-point.com)
> -Wiki-Tools (http://wiki-tools.com)
> -Animepedia (http://anime.wikia.com)
> -Narutopedia (http://naruto.wikia.com)
> -Soul Eater Wiki (http://souleater.wikia.com)
>
>
>
> Yaron Koren wrote:
>
> Oh yeah. :)
> -Yaron
>
> On Tue, Jan 13, 2009 at 8:46 PM, Rolf Lampa <rolf.lampa@...> <rolf.lampa@...> wrote:
>
>
>
>  And if you're really really bold you could try {{#set:property-name = ...
> }} :-)
>
> // Rolf Lampa
>
>
> Yaron Koren skrev:
>
>
>
>  Try the #set parser function, discussed on this list last week - the call
> is "{{#set:property-name:value}}".
>
> (By the way, Daniel, perhaps this is a good example of why there should be
> a non-silent option for #set? :) )
>
> -Yaron
>
>
> On Tue, Jan 13, 2009 at 7:30 PM, Brian <Brian.Mingus@...<mailto:
> Brian.Mingus@...> <Brian.Mingus@...>> wrote:
>
>    How do you suggest I deal with the following situation? I would
>    like to keep the original data intact, and yet it contains many
>    brackets. This string is not properly parsed by SMW.
>
>
>    [[abstract::In the present study, <...>
>
>
>
>
>    ------------------------------
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.http://p.sf.net/sfu/sf-spreadtheword
>
>
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.
> http://p.sf.net/sfu/sf-spreadtheword
> _______________________________________________
> Semediawiki-user mailing list
> Semediawiki-user@...
> https://lists.sourceforge.net/lists/listinfo/semediawiki-user
>
>

Re: [Semediawiki-user] Mapping of traditional database to wiki.

[Jie Bao <baojie@gm...>]

In fact, I believe this is a critical issue. DB <-> SemWiki data
porting will be very useful and proper tools should be available.
However, as far as I know, there is no such ready tool yet. My team
has been thinking about doing this. We'd like to join with others who
share the similar interest.

Jie

On Tue, Jan 13, 2009 at 12:26 AM, Ajay Dalal <ajay.bojam@...> wrote:
> Hi,
>
> Please suggest me the ways how I can map a traditional database to mediawiki
> or sematic mediawiki. Please provide me any tutorial.
>
> Thanks,
> Ajay
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.
> http://p.sf.net/sfu/sf-spreadtheword
> _______________________________________________
> Semediawiki-user mailing list
> Semediawiki-user@...
> https://lists.sourceforge.net/lists/listinfo/semediawiki-user
>
>



-- 
Jie
http://www.cs.rpi.edu/~baojie

Re: [Semediawiki-user] Problem: Inline queries with underscores in category

[Brian <Brian.Mingus@co...>]

I could be wrong about this, but I don't believe underscores exist in
mediawiki - have you tried the query with a space instead?

On Fri, Dec 19, 2008 at 5:47 AM, De Pessemier An <
An.DePessemier@...> wrote:

>   Hi,
>
>
>
>             I'm using Semantic MediaWiki version 1.4.0 and I'm having
> problems to use categories with an underscore into inline queries.
>
>             The result of the query is always empty.
>
> Is it possible? How can it be done?
>
>
>
> Kind regards,
>
> NV Michel Van de Wiele
>
>
>
> An De Pessemier
>
>
>
> An.DePessemier@...
>
>
>
>
>   ------------------------------
>
> Van de Wiele Company or its affiliates do not accept legal responsibility
> for the contents of this message.  The views or opinions presented are
> solely those of the author and do not necessarily represent those of Van de
> Wiele Company or any of its affiliates.
>   ------------------------------
>
>
>
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.
> http://p.sf.net/sfu/sf-spreadtheword
> _______________________________________________
> Semediawiki-user mailing list
> Semediawiki-user@...
> https://lists.sourceforge.net/lists/listinfo/semediawiki-user
>
>

Re: [Semediawiki-user] commas in inline queries

[Daniel Friesen <dan_the_man@te...>]

Let me guess, you didn't read the manual and are trying to use commas to 
list multiple values without looking on the proper way to do an or query?
Commas are taken as literal values, || is used inside of a block to 
separate multiple values.

         {{#ask: [[subject::Arts||Music||Literature]]
         | ?title
         | ?author
         }}

Or if you were trying to do an AND:

         {{#ask: [[subject::Arts]] [[subject::Music]] [[subject::Literature]]
         | ?title
         | ?author
         }}

~Daniel Friesen (Dantman, Nadir-Seen-Fire) [http://nadir-seen-fire.com]
-Nadir-Point (http://nadir-point.com)
-Wiki-Tools (http://wiki-tools.com)
-Animepedia (http://anime.wikia.com)
-Narutopedia (http://naruto.wikia.com)
-Soul Eater Wiki (http://souleater.wikia.com)



Jason Zou wrote:
> Hi everyone,
>
> I am new to this list and semantic wiki. I tried to use inline query but
> found out that it seems that commas are not allowed in a query.
> The problem query is very simple as follows:
>          {{#ask: [[subject::Arts, Music, Literature]]
>          | ?title
>          | ?author
>          }}
> My other queries without commas work fine.
>
> Is this a bug or is the query designed this way?
>
> Thanks,
>
> Jason
>
>   
> ------------------------------------------------------------------------
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.
> http://p.sf.net/sfu/sf-spreadtheword

[Semediawiki-user] Fwd: Semantic Results Format-Ploticus now available

[Joel Natividad <joel.natividad@gm...>]

Hi folks,I've been using SMW since 0.7 behind the corporate firewall and
have been lurking in the background.

After attending the first SMW User Group Meeting, got revved up again and
decided to start giving back.

Using SMW in the corporate setting, its no secret that half the success of
any intranet initiative is adoption (and I know that first-hand from
experience and a couple of "ghost town" intranets).

Apart from usability - there's also another vital component - nice and
pretty charts - at least for the mgmt types :)

Joking aside - here it is - SRF-Ploticus. (
http://svn.wikimedia.org/viewvc/mediawiki/trunk/extensions/SemanticResultFormats/Ploticus/
)

See http://ploticus.sourceforge.net to find out more about Ploticus.

The SRF-Ploticus Help/Gallery minisite is currently being built that's why
I'm just pointing to viewvc for now.  But the README is pretty thorough
and using the result printer is pretty straightforward once you get up to
speed with Ploticus.

It's a first installment and I'm already working on some improvements.  (the
upcoming help/gallery minisite will have the roadmap)

The project started out of the need for some canned reports for - (wait for
it) mgmt types, and tables were just not cutting it.  SRF-Googlepie and
Googlechart were non-starters as well coz of security concerns.

Yaron just checked in the code in SVN and I look forward to all your
feedback.

Enjoy!
Joel

P.S.
Thanks Yaron for all the help!



-- 
=======================================================
joel@... * wireless@...
Think Different! (http://en.wikipedia.org/wiki/Think_different#Text)

Re: [Semediawiki-user] Inline queries - how to format the property value results where there is more than one value per page

[Yaron Koren <yaron57@gm...>]

In the #ask query, you should be able to change the delimiter from a comma
to anything else using the "sep=" parameter.
-Yaron

On Wed, Jan 14, 2009 at 9:02 AM, Alex Le Bek <alexlebek@...>wrote:

> Hi,
> I have tried to use arraymap in this situation but  this doesn't solve my
> problem as the values for the property may themselves  *contain* the
> delimiter (eg commas). I can see that when there is more than one value for
> a property on the same page SMW 'sees' the separation (there is always a
> space between the values) but I don't see how I can extract each value using
> the #ask result which delimits with a ', ' when such a pattern may also be
> in a value. Any help welcome - and sorry if I have overlooked the obvious.
>                                           Alex
>
>
> On Sat, Dec 13, 2008 at 5:26 AM, S Page <info@...> wrote:
>
>> Alex Le Bek wrote:
>>
>>  I have a property 'Top tip' which occurs more than once on a page. Is
>>> there a way to format the Top tip result so as it doesn't return as one
>>> comma separated row? Ideally I would prefer to format it through mytemplate.
>>>  I think I need something like SF #arraymap in mytemplate. Perhaps this can
>>> be done - I just don't see it.
>>>
>>> {{#ask: [[Mypage]] [[Top tip::+]]
>>> | ?Top tip
>>> |format=template
>>> |template=mytemplate
>>> }}
>>>
>>
>> Yes, use #arraymap  In your example, the second parameter to mytemplate
>> will be a comma-separated list of Top tip values (the first parameter is the
>> page title matching the selection criteria), so in Template:Mytemplate you'd
>> do something like
>>  {{#arraymap:{{{2|}}}|, |x|Special suggestion x | - }}
>> to get (I think, haven't tested)
>>  Special suggestion Abc - Special suggestion Defg, etc.
>>
>>
>> I suggest you adopt a more expressive template naming convention,
>> something like [[Template:Top tip query results 1-liner B]] otherwise you'll
>> go crazy.
>>
>> --
>> =S
>>
>
>
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.
> http://p.sf.net/sfu/sf-spreadtheword
> _______________________________________________
> Semediawiki-user mailing list
> Semediawiki-user@...
> https://lists.sourceforge.net/lists/listinfo/semediawiki-user
>
>

[Semediawiki-user] commas in inline queries

[Jason Zou <jason.zou@gm...>]

Hi everyone,

I am new to this list and semantic wiki. I tried to use inline query but
found out that it seems that commas are not allowed in a query.
The problem query is very simple as follows:
         {{#ask: [[subject::Arts, Music, Literature]]
         | ?title
         | ?author
         }}
My other queries without commas work fine.

Is this a bug or is the query designed this way?

Thanks,

Jason

Re: [Semediawiki-user] Iterating queries - go 'phut' at 3rd iteration

[Izzy <Isabel.Sargent@or...>]

Has there been any more progress on this, or is it considered a quirk of SMW
that we shouldn't be messing with?

I have tried several different ways around the problem but can find no
workable ways to return the hierarchy of set of pages. This would be so
useful as our Wiki grows.
-- 
View this message in context: http://www.nabble.com/Iterating-queries---go-%27phut%27-at-3rd-iteration-tp20915048p21458522.html
Sent from the Semantic Mediawiki - User mailing list archive at Nabble.com.

Re: [Semediawiki-user] Inline queries - how to format the property value results where there is more than one value per page

[Alex Le Bek <alexlebek@go...>]

Hi,
I have tried to use arraymap in this situation but  this doesn't solve my
problem as the values for the property may themselves  *contain* the
delimiter (eg commas). I can see that when there is more than one value for
a property on the same page SMW 'sees' the separation (there is always a
space between the values) but I don't see how I can extract each value using
the #ask result which delimits with a ', ' when such a pattern may also be
in a value. Any help welcome - and sorry if I have overlooked the obvious.
                                         Alex

On Sat, Dec 13, 2008 at 5:26 AM, S Page <info@...> wrote:

> Alex Le Bek wrote:
>
>  I have a property 'Top tip' which occurs more than once on a page. Is
>> there a way to format the Top tip result so as it doesn't return as one
>> comma separated row? Ideally I would prefer to format it through mytemplate.
>>  I think I need something like SF #arraymap in mytemplate. Perhaps this can
>> be done - I just don't see it.
>>
>> {{#ask: [[Mypage]] [[Top tip::+]]
>> | ?Top tip
>> |format=template
>> |template=mytemplate
>> }}
>>
>
> Yes, use #arraymap  In your example, the second parameter to mytemplate
> will be a comma-separated list of Top tip values (the first parameter is the
> page title matching the selection criteria), so in Template:Mytemplate you'd
> do something like
>  {{#arraymap:{{{2|}}}|, |x|Special suggestion x | - }}
> to get (I think, haven't tested)
>  Special suggestion Abc - Special suggestion Defg, etc.
>
>
> I suggest you adopt a more expressive template naming convention, something
> like [[Template:Top tip query results 1-liner B]] otherwise you'll go crazy.
>
> --
> =S
>

Re: [Semediawiki-user] Brackets in property values

[<zehetner@mo...>]

The #Property function Markus described in a recent message seems to work too
for non-page type property values with brackets in them:

{{#Property:abstract|[(+/-)-trans-1,3,4,4a,5,10b-hexahydro-4-propyl-2H-[1]benzopyrano[3,4-b]-pyridin-9-ol]}}

Gu

Quoting Brian <Brian.Mingus@...>:

> How do you suggest I deal with the following situation? I would like to keep
> the original data intact, and yet it contains many brackets. This string is
> not properly parsed by SMW.
> 
> 
> [[abstract::In the present study, a novel and exceptionally sensitive method
> of high-performance liquid chromatography coupled to coulometric detection,
> together with concentric dialysis probes, was exploited for an examination
> of the role of autoreceptors and heteroceptors in the modulation of
> dopamine, noradrenaline and serotonin levels in single samples of the
> frontal cortex of freely-moving rats. The selective D3/D2 receptor agonist,
> CGS 15855A
> [(+/-)-trans-1,3,4,4a,5,10b-hexahydro-4-propyl-2H-[1]benzopyrano[3
> ,4-b]-pyridin-9-ol], and antagonist, raclopride, respectively decreased
> (-50%) and increased (+60%) levels of dopamine without significantly
> modifying those of serotonin and noradrenaline. The selective
> alpha2-adrenergic receptor agonist, dexmedetomidine, markedly decreased
> noradrenaline levels (-100%) and likewise suppressed those of serotonin and
> dopamine by -55 and -45%, respectively. This effect was mimicked by the
> preferential alpha2-adrenergic receptor agonist, guanabenz (-100%, -60% and
> -50%). Furthermore, the alpha2-adrenergic receptor antagonist, RX 821,002
> [2(2-methoxy-1,4-benzodioxan-2-yl)-2-imidazoline], and the preferential
> alpha2A-adrenergic receptor antagonist, BRL 44408
> [2-(2H-(1-methyl-1,3-dihydroisoindole)methyl)-4,5-dihydroimidaz ole], both
> evoked a pronounced elevation in levels of noradrenaline (+212%, +109%) and
> dopamine (+73%, +85%). In contrast, the preferential alpha(2B/2C)-adrenergic
> receptor antagonist, prazosin, did not modify noradrenaline and dopamine
> levels. RX 821,002 and BRL 44408 did not significantly modify levels of
> serotonin, whereas prazosin decreased these levels markedly (-55%), likely
> due to its alpha1-adrenergic receptor antagonist properties. The selective
> serotonin-1A receptor agonist, 8-hydroxy-2-(di-n-propylamino)-tetralin
> (8-OH-DPAT), reduced serotonin levels (-65%) and increased those of dopamine
> and noradrenaline by +100%), and +175%, respectively. The selective
> serotonin-1A antagonist, WAY 100,635
> [N-[2-[4-(2-methoxyphenyl)-1-piperazinyl]ethyl]-N-(2-pyridinyl)cyclo-
> hexanecarboxamide], which had little affect on monoamine levels alone,
> abolished the influence of 8-OH-DPAT upon serotonin and dopamine levels and
> significantly attenuated its influence upon noradrenaline levels. Finally,
> the selective serotonin-1B agonist, GR 46611
> [3-[3-(2-dimethylaminoethyl)-1H-indol-5-yl]-N-(4-methoxybenzyl)acrylamid e],
> decreased serotonin levels (-49%) and the serotonin-1B antagonist, GR
> 127,935 [N-[4-methoxy-3-(4-methylpiperazin-1-yl)phenyl]-2'-methyl-4'-(5-me
> thyl-1,2,4-oxadiazol-3-yl)-biphenyl-4-carboxamide], which did not
> significantly modify serotonin levels alone, abolished this action of GR
> 46611. Levels of dopamine and noradrenaline were not affected by GR 46611 or
> GR 127,935. In conclusion, there is a complex pattern of reciprocal
> autoreceptor and heteroceptor control of monoamine release in the frontal
> cortex. Most notably, activation of alpha2-adrenergic receptors inhibits the
> release of noradrenaline, dopamine and serotonin in each case, while
> stimulation of serotonin-1A receptors suppresses serotonin, yet facilitates
> noradrenaline and dopamine release. In addition, dopamine D2/D3
> autoreceptors restrain dopamine release while (terminal-localized)
> serotonin-1B receptors reduce serotonin release. Control of serotonin
> release is expressed phasically and that of noradrenaline and dopamine
> release tonically.]]
> 

Re: [Semediawiki-user] Ontology visualization in Semantic Mediawiki?

[Yuan-Fang Li <liyuanfang@gm...>]

Hi Philipp,

Thanks for the info. I've "successfully" installed the Halo extension
but I have several questions. I know this isn't really the right place
to post the questions. However, I can't register a new user as the IP
address was previously banned.

I downloaded the zip file from sf.net and followed instructions
(http://smwforum.ontoprise.com/smwforum/index.php/Manual_SMW%2B_Installation).
The ontology browser is working. However, I have a few questions.


*. In the apache log, I get a lot of the "file does not exist" error
for "extensions/SMWHalo/skins/Glossary". It's apparently not in the
package (nor in the svn repo, I just did a check out). Where can I get
it?
[Wed Jan 14 15:46:10 2009] [error] [client 127.0.0.1] File does not
exist: C:/Program Files/Apache Software
Foundation/Apache2.2/htdocs/mediawiki/extensions/SMWHalo/skins/Glossary,
referer: http://localhost/mediawiki/index.php/Special:Version

*. In the apache log, I also get the "file doesn't exist" error for
lightbulb.css:
[Wed Jan 14 15:46:10 2009] [error] [client 127.0.0.1] File does not
exist: C:/Program Files/Apache Software
Foundation/Apache2.2/htdocs/mediawiki/skins/lightbulb.css, referer:
http://localhost/mediawiki/index.php/Special:Version

*. The same thing for niftyCorners.css. It is in skins/ontoskin2/, but
mediawiki seems to think it's under root directory.

*. Is it possible to reassign the category of an instance in the
ontology browser page?

*. When I use ontoskin2, the wgLogo image overlaps with the breadcrumbs.

My mediawiki is version 1.13.3 (latest) and semantic mediawiki is
version 1.4.1 (latest as well).

Thanks for looking!

Regards
Yuan-Fang


On Fri, Jan 9, 2009 at 8:21 PM, Philipp Zaltenbach
<zaltenbach@...> wrote:
> Hi,
>
> the Halo extension supports ontology editing, too. You have to be logged in
> as Sysop or Admin to manipulate the ontology in the ontology browser.
>
> Regards,
> Philipp Zaltenbach
>
> Yuan-Fang Li schrieb:
>>
>> Thanks Yaron for the pointer to Halo. I had a brief look at the Halo
>> extension yesterday. It seems that they support ontology visualization
>> only, but not ontology editing. But I may be wrong. I'll take another
>> look.
>>
>> Yuan-Fang
>>
>>
>> On Fri, Jan 9, 2009 at 2:51 PM, Yaron Koren <yaron57@...> wrote:
>>
>>>
>>> Properties within SMW can easily be mapped to terms in existing
>>> ontologies,
>>> through the "Equivalent URI" property:
>>> http://semantic-mediawiki.org/wiki/Property:Equivalent_URI
>>> Also, for visualizing and editing ontologies directly, you should
>>> probably
>>> check out the Halo extension:
>>> http://www.mediawiki.org/wiki/Extension:Halo_Extension
>>> -Yaron
>>>
>>
>>
>> ------------------------------------------------------------------------------
>> Check out the new SourceForge.net Marketplace.
>> It is the best place to buy or sell services for
>> just about anything Open Source.
>> http://p.sf.net/sfu/Xq1LFB
>> _______________________________________________
>> Semediawiki-user mailing list
>> Semediawiki-user@...
>> https://lists.sourceforge.net/lists/listinfo/semediawiki-user
>>
>
> --
> Philipp Zaltenbach
> Professional Services
> ontoprise GmbH - know how to use Know-how
> ---
> An der RaumFabrik 29; 76227 Karlsruhe
> Tel.: +49 721 509809-0; Fax: +49 721 509809-11
> E-Mail: zaltenbach@...
> Web: http://www.ontoprise.de
> Sitz der Gesellschaft: Karlsruhe, Amtsgericht Mannheim, HRB 109540
> Geschäftsführer: Prof. Dr. Jürgen Angele, Dipl. Wi.-Ing. Hans-Peter Schnurr
> ___________________________________
> This e-mail may contain confidential and/or privileged information. If you
> are not the intended recipient (or have received this e-mail in error)
> please notify the sender immediately and destroy this e-mail. Any
> unauthorized copying, disclosure or distribution of the material in this
> e-mail is strictly forbidden.

Re: [Semediawiki-user] Brackets in property values

[Yaron Koren <yaron57@gm...>]

Yeah, that's true, you could do it that way too.
-Yaron


On Tue, Jan 13, 2009 at 9:42 PM, Daniel Friesen <dan_the_man@...>wrote:

>  ^_^ You know, if you were absolutely desperate for a set function that
> would also display:
>
> [[Template:Set]]
>
> {{#declare:{{{{1}}}=2}}{{{2}}}
>
> And then boom in your article:
>
> {{set|abstract|In the present study, a novel and exceptionally sensitive method
> of high-performance liquid chromatography coupled to coulometric detection,
> together with concentric dialysis probes, was exploited for an examination
> of the role of autoreceptors and heteroceptors in the modulation of
> dopamine, noradrenaline and serotonin levels in single samples of the
> frontal co...drenaline, dopamine and serotonin in each case, while
> stimulation of serotonin-1A receptors suppresses serotonin, yet facilitates
> noradrenaline and dopamine release. In addition, dopamine D2/D3
> autoreceptors restrain dopamine release while (terminal-localized)
> serotonin-1B receptors reduce serotonin release. Control of serotonin
> release is expressed phasically and that of noradrenaline and dopamine
> release tonically.}}
>
> ~Daniel Friesen (Dantman, Nadir-Seen-Fire) [http://nadir-seen-fire.com]
> -Nadir-Point (http://nadir-point.com)
> -Wiki-Tools (http://wiki-tools.com)
> -Animepedia (http://anime.wikia.com)
> -Narutopedia (http://naruto.wikia.com)
> -Soul Eater Wiki (http://souleater.wikia.com)
>
>
>
> Yaron Koren wrote:
>
> Oh yeah. :)
> -Yaron
>
> On Tue, Jan 13, 2009 at 8:46 PM, Rolf Lampa <rolf.lampa@...> <rolf.lampa@...> wrote:
>
>
>
>  And if you're really really bold you could try {{#set:property-name = ...
> }} :-)
>
> // Rolf Lampa
>
>
> Yaron Koren skrev:
>
>
>
>  Try the #set parser function, discussed on this list last week - the call
> is "{{#set:property-name:value}}".
>
> (By the way, Daniel, perhaps this is a good example of why there should be
> a non-silent option for #set? :) )
>
> -Yaron
>
>
> On Tue, Jan 13, 2009 at 7:30 PM, Brian <Brian.Mingus@...<mailto:
> Brian.Mingus@...> <Brian.Mingus@...>> wrote:
>
>    How do you suggest I deal with the following situation? I would
>    like to keep the original data intact, and yet it contains many
>    brackets. This string is not properly parsed by SMW.
>
>
>    [[abstract::In the present study, <...>
>
>
>
>
>    ------------------------------
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.http://p.sf.net/sfu/sf-spreadtheword
>
>
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.
> http://p.sf.net/sfu/sf-spreadtheword
> _______________________________________________
> Semediawiki-user mailing list
> Semediawiki-user@...
> https://lists.sourceforge.net/lists/listinfo/semediawiki-user
>
>

Re: [Semediawiki-user] Brackets in property values

[Daniel Friesen <dan_the_man@te...>]

^_^ You know, if you were absolutely desperate for a set function that 
would also display:

[[Template:Set]]

{{#declare:{{{{1}}}=2}}{{{2}}}

And then boom in your article:

{{set|abstract|In the present study, a novel and exceptionally sensitive method
of high-performance liquid chromatography coupled to coulometric detection,
together with concentric dialysis probes, was exploited for an examination
of the role of autoreceptors and heteroceptors in the modulation of
dopamine, noradrenaline and serotonin levels in single samples of the
frontal co...drenaline, dopamine and serotonin in each case, while
stimulation of serotonin-1A receptors suppresses serotonin, yet facilitates
noradrenaline and dopamine release. In addition, dopamine D2/D3
autoreceptors restrain dopamine release while (terminal-localized)
serotonin-1B receptors reduce serotonin release. Control of serotonin
release is expressed phasically and that of noradrenaline and dopamine
release tonically.}}

~Daniel Friesen (Dantman, Nadir-Seen-Fire) [http://nadir-seen-fire.com]
-Nadir-Point (http://nadir-point.com)
-Wiki-Tools (http://wiki-tools.com)
-Animepedia (http://anime.wikia.com)
-Narutopedia (http://naruto.wikia.com)
-Soul Eater Wiki (http://souleater.wikia.com)



Yaron Koren wrote:
> Oh yeah. :)
> -Yaron
>
> On Tue, Jan 13, 2009 at 8:46 PM, Rolf Lampa <rolf.lampa@...> wrote:
>
>   
>> And if you're really really bold you could try {{#set:property-name = ...
>> }} :-)
>>
>> // Rolf Lampa
>>
>>
>> Yaron Koren skrev:
>>
>>     
>>> Try the #set parser function, discussed on this list last week - the call
>>> is "{{#set:property-name:value}}".
>>>
>>> (By the way, Daniel, perhaps this is a good example of why there should be
>>> a non-silent option for #set? :) )
>>>
>>> -Yaron
>>>
>>>
>>> On Tue, Jan 13, 2009 at 7:30 PM, Brian <Brian.Mingus@...<mailto:
>>> Brian.Mingus@...>> wrote:
>>>
>>>    How do you suggest I deal with the following situation? I would
>>>    like to keep the original data intact, and yet it contains many
>>>    brackets. This string is not properly parsed by SMW.
>>>
>>>
>>>    [[abstract::In the present study, <...>
>>>
>>>
>>>       
>
>   
> ------------------------------------------------------------------------
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.
> http://p.sf.net/sfu/sf-spreadtheword

Re: [Semediawiki-user] Brackets in property values

[Rolf Lampa <rolf.lampa@ri...>]

And if you're really really bold you could try {{#set:property-name = 
... }} :-)

// Rolf Lampa


Yaron Koren skrev:
> Try the #set parser function, discussed on this list last week - the 
> call is "{{#set:property-name:value}}".
>
> (By the way, Daniel, perhaps this is a good example of why there 
> should be a non-silent option for #set? :) )
>
> -Yaron
>
>
> On Tue, Jan 13, 2009 at 7:30 PM, Brian <Brian.Mingus@... 
> <mailto:Brian.Mingus@...>> wrote:
>
>     How do you suggest I deal with the following situation? I would
>     like to keep the original data intact, and yet it contains many
>     brackets. This string is not properly parsed by SMW.
>
>
>     [[abstract::In the present study, <...>
>

Re: [Semediawiki-user] Brackets in property values

[Yaron Koren <yaron57@gm...>]

Oh yeah. :)
-Yaron

On Tue, Jan 13, 2009 at 8:46 PM, Rolf Lampa <rolf.lampa@...> wrote:

> And if you're really really bold you could try {{#set:property-name = ...
> }} :-)
>
> // Rolf Lampa
>
>
> Yaron Koren skrev:
>
>> Try the #set parser function, discussed on this list last week - the call
>> is "{{#set:property-name:value}}".
>>
>> (By the way, Daniel, perhaps this is a good example of why there should be
>> a non-silent option for #set? :) )
>>
>> -Yaron
>>
>>
>> On Tue, Jan 13, 2009 at 7:30 PM, Brian <Brian.Mingus@...<mailto:
>> Brian.Mingus@...>> wrote:
>>
>>    How do you suggest I deal with the following situation? I would
>>    like to keep the original data intact, and yet it contains many
>>    brackets. This string is not properly parsed by SMW.
>>
>>
>>    [[abstract::In the present study, <...>
>>
>>

Re: [Semediawiki-user] Mapping of traditional database to wiki.

[Yaron Koren <yaron57@gm...>]

I don't believe any such tutorial exists, unfortunately.
-Yaron

On Tue, Jan 13, 2009 at 12:26 AM, Ajay Dalal <ajay.bojam@...> wrote:

> Hi,
>
> Please suggest me the ways how I can map a traditional database to
> mediawiki or sematic mediawiki. Please provide me any tutorial.
>
> Thanks,
> Ajay
>
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.
> http://p.sf.net/sfu/sf-spreadtheword
> _______________________________________________
> Semediawiki-user mailing list
> Semediawiki-user@...
> https://lists.sourceforge.net/lists/listinfo/semediawiki-user
>
>

Re: [Semediawiki-user] Brackets in property values

[Yaron Koren <yaron57@gm...>]

Try the #set parser function, discussed on this list last week - the call is
"{{#set:property-name:value}}".
(By the way, Daniel, perhaps this is a good example of why there should be a
non-silent option for #set? :) )

-Yaron


On Tue, Jan 13, 2009 at 7:30 PM, Brian <Brian.Mingus@...> wrote:

> How do you suggest I deal with the following situation? I would like to
> keep the original data intact, and yet it contains many brackets. This
> string is not properly parsed by SMW.
>
>
> [[abstract::In the present study, a novel and exceptionally sensitive
> method of high-performance liquid chromatography coupled to coulometric
> detection, together with concentric dialysis probes, was exploited for an
> examination of the role of autoreceptors and heteroceptors in the modulation
> of dopamine, noradrenaline and serotonin levels in single samples of the
> frontal cortex of freely-moving rats. The selective D3/D2 receptor agonist,
> CGS 15855A
> [(+/-)-trans-1,3,4,4a,5,10b-hexahydro-4-propyl-2H-[1]benzopyrano[3
> ,4-b]-pyridin-9-ol], and antagonist, raclopride, respectively decreased
> (-50%) and increased (+60%) levels of dopamine without significantly
> modifying those of serotonin and noradrenaline. The selective
> alpha2-adrenergic receptor agonist, dexmedetomidine, markedly decreased
> noradrenaline levels (-100%) and likewise suppressed those of serotonin and
> dopamine by -55 and -45%, respectively. This effect was mimicked by the
> preferential alpha2-adrenergic receptor agonist, guanabenz (-100%, -60% and
> -50%). Furthermore, the alpha2-adrenergic receptor antagonist, RX 821,002
> [2(2-methoxy-1,4-benzodioxan-2-yl)-2-imidazoline], and the preferential
> alpha2A-adrenergic receptor antagonist, BRL 44408
> [2-(2H-(1-methyl-1,3-dihydroisoindole)methyl)-4,5-dihydroimidaz ole], both
> evoked a pronounced elevation in levels of noradrenaline (+212%, +109%) and
> dopamine (+73%, +85%). In contrast, the preferential alpha(2B/2C)-adrenergic
> receptor antagonist, prazosin, did not modify noradrenaline and dopamine
> levels. RX 821,002 and BRL 44408 did not significantly modify levels of
> serotonin, whereas prazosin decreased these levels markedly (-55%), likely
> due to its alpha1-adrenergic receptor antagonist properties. The selective
> serotonin-1A receptor agonist, 8-hydroxy-2-(di-n-propylamino)-tetralin
> (8-OH-DPAT), reduced serotonin levels (-65%) and increased those of dopamine
> and noradrenaline by +100%), and +175%, respectively. The selective
> serotonin-1A antagonist, WAY 100,635
> [N-[2-[4-(2-methoxyphenyl)-1-piperazinyl]ethyl]-N-(2-pyridinyl)cyclo-
> hexanecarboxamide], which had little affect on monoamine levels alone,
> abolished the influence of 8-OH-DPAT upon serotonin and dopamine levels and
> significantly attenuated its influence upon noradrenaline levels. Finally,
> the selective serotonin-1B agonist, GR 46611
> [3-[3-(2-dimethylaminoethyl)-1H-indol-5-yl]-N-(4-methoxybenzyl)acrylamid e],
> decreased serotonin levels (-49%) and the serotonin-1B antagonist, GR
> 127,935 [N-[4-methoxy-3-(4-methylpiperazin-1-yl)phenyl]-2'-methyl-4'-(5-me
> thyl-1,2,4-oxadiazol-3-yl)-biphenyl-4-carboxamide], which did not
> significantly modify serotonin levels alone, abolished this action of GR
> 46611. Levels of dopamine and noradrenaline were not affected by GR 46611 or
> GR 127,935. In conclusion, there is a complex pattern of reciprocal
> autoreceptor and heteroceptor control of monoamine release in the frontal
> cortex. Most notably, activation of alpha2-adrenergic receptors inhibits the
> release of noradrenaline, dopamine and serotonin in each case, while
> stimulation of serotonin-1A receptors suppresses serotonin, yet facilitates
> noradrenaline and dopamine release. In addition, dopamine D2/D3
> autoreceptors restrain dopamine release while (terminal-localized)
> serotonin-1B receptors reduce serotonin release. Control of serotonin
> release is expressed phasically and that of noradrenaline and dopamine
> release tonically.]]
>
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.
> http://p.sf.net/sfu/sf-spreadtheword
> _______________________________________________
> Semediawiki-user mailing list
> Semediawiki-user@...
> https://lists.sourceforge.net/lists/listinfo/semediawiki-user
>
>

[Semediawiki-user] Brackets in property values

[Brian <Brian.Mingus@co...>]

How do you suggest I deal with the following situation? I would like to keep
the original data intact, and yet it contains many brackets. This string is
not properly parsed by SMW.


[[abstract::In the present study, a novel and exceptionally sensitive method
of high-performance liquid chromatography coupled to coulometric detection,
together with concentric dialysis probes, was exploited for an examination
of the role of autoreceptors and heteroceptors in the modulation of
dopamine, noradrenaline and serotonin levels in single samples of the
frontal cortex of freely-moving rats. The selective D3/D2 receptor agonist,
CGS 15855A
[(+/-)-trans-1,3,4,4a,5,10b-hexahydro-4-propyl-2H-[1]benzopyrano[3
,4-b]-pyridin-9-ol], and antagonist, raclopride, respectively decreased
(-50%) and increased (+60%) levels of dopamine without significantly
modifying those of serotonin and noradrenaline. The selective
alpha2-adrenergic receptor agonist, dexmedetomidine, markedly decreased
noradrenaline levels (-100%) and likewise suppressed those of serotonin and
dopamine by -55 and -45%, respectively. This effect was mimicked by the
preferential alpha2-adrenergic receptor agonist, guanabenz (-100%, -60% and
-50%). Furthermore, the alpha2-adrenergic receptor antagonist, RX 821,002
[2(2-methoxy-1,4-benzodioxan-2-yl)-2-imidazoline], and the preferential
alpha2A-adrenergic receptor antagonist, BRL 44408
[2-(2H-(1-methyl-1,3-dihydroisoindole)methyl)-4,5-dihydroimidaz ole], both
evoked a pronounced elevation in levels of noradrenaline (+212%, +109%) and
dopamine (+73%, +85%). In contrast, the preferential alpha(2B/2C)-adrenergic
receptor antagonist, prazosin, did not modify noradrenaline and dopamine
levels. RX 821,002 and BRL 44408 did not significantly modify levels of
serotonin, whereas prazosin decreased these levels markedly (-55%), likely
due to its alpha1-adrenergic receptor antagonist properties. The selective
serotonin-1A receptor agonist, 8-hydroxy-2-(di-n-propylamino)-tetralin
(8-OH-DPAT), reduced serotonin levels (-65%) and increased those of dopamine
and noradrenaline by +100%), and +175%, respectively. The selective
serotonin-1A antagonist, WAY 100,635
[N-[2-[4-(2-methoxyphenyl)-1-piperazinyl]ethyl]-N-(2-pyridinyl)cyclo-
hexanecarboxamide], which had little affect on monoamine levels alone,
abolished the influence of 8-OH-DPAT upon serotonin and dopamine levels and
significantly attenuated its influence upon noradrenaline levels. Finally,
the selective serotonin-1B agonist, GR 46611
[3-[3-(2-dimethylaminoethyl)-1H-indol-5-yl]-N-(4-methoxybenzyl)acrylamid e],
decreased serotonin levels (-49%) and the serotonin-1B antagonist, GR
127,935 [N-[4-methoxy-3-(4-methylpiperazin-1-yl)phenyl]-2'-methyl-4'-(5-me
thyl-1,2,4-oxadiazol-3-yl)-biphenyl-4-carboxamide], which did not
significantly modify serotonin levels alone, abolished this action of GR
46611. Levels of dopamine and noradrenaline were not affected by GR 46611 or
GR 127,935. In conclusion, there is a complex pattern of reciprocal
autoreceptor and heteroceptor control of monoamine release in the frontal
cortex. Most notably, activation of alpha2-adrenergic receptors inhibits the
release of noradrenaline, dopamine and serotonin in each case, while
stimulation of serotonin-1A receptors suppresses serotonin, yet facilitates
noradrenaline and dopamine release. In addition, dopamine D2/D3
autoreceptors restrain dopamine release while (terminal-localized)
serotonin-1B receptors reduce serotonin release. Control of serotonin
release is expressed phasically and that of noradrenaline and dopamine
release tonically.]]