Recent changes to Home

Home modified by Rania Ibrahim

Rania Ibrahim — Thu, 03 Jul 2014 15:42:37 -0000

--- v3
+++ v4
@@ -10,3 +10,11 @@
 In the Release folder:
 train.txt and test.txt is the gene expressions experiment for breast cancer samples downloaded from GSE20713, unlabeled.txt is the gene expressions experiment for breast cancer samples downloaded from GSE16179 and unlabeled-normalized.txt is unlabeled.txt after applying log2-transformation on the expression values.

+To run co-training:
+java -jar -Xms2500m CoTraining.jar \[trainFile-Side1\] \[testFile-Side1\] \[labelFile-Side1\] \[unlabeledFile-Side1\] \[trainFile-Side2\] \[testFile-Side2\] \[labelFile-Side2\] \[unlabeledFile-Side2\] \[MappingFile\] \[Alpha\] \[ClassifierType(randomforest,svm)\] \[resultFile\] \[ClassifierModelFileSide1\] \[ClassifierModelFileSide2\]
+
+java -jar -Xms2500m CoTraining.jar train-side1.txt test-side1.txt labels-side1.txt unlabeled-side1.txt train-side2.txt test-side2.txt labels-side2.txt unlabeled-side2.txt geneMiRNAs.txt 0.5 randomforest randomforest-result.txt randomforest-classifierSide1.txt randomforest-classifierSide2.txt
+java -jar -Xms2500m CoTraining.jar train-side1.txt test-side1.txt labels-side1.txt unlabeled-side1.txt train-side2.txt test-side2.txt labels-side2.txt unlabeled-side2.txt geneMiRNAs.txt 0.5 svm svm-result.txt svm-classifierSide1.txt svm-classifierSide2.txt
+
+In the Release folder:
+You can find train, test, unlabeled and labels files for side 1 (genes expressions) and side 2 (miRNAs expressions) for breast cancer samples.

Home modified by Rania Ibrahim

Rania Ibrahim — Wed, 02 Jul 2014 16:27:42 -0000

--- v2
+++ v3
@@ -1,7 +1,7 @@
 Welcome to wiki!

 For Self-Learning:
-java -jar -Xms1700m SelfLearner.jar [trainFile] [testFile] [labelFile] [unlabeledFile] [Alpha] [ClassifierType(randomforest,svm)] [resultFile] [ClassifierModelFile]
+java -jar -Xms1700m SelfLearner.jar \[trainFile\] \[testFile\] \[labelFile\] \[unlabeledFile\] \[Alpha\] \[ClassifierType(randomforest,svm)\] \[resultFile\] \[ClassifierModelFile\]

 For example:
 java -jar -Xms1700m SelfLearner.jar train.txt test.txt labels.txt unlabeled-normalized.txt 0.5 randomforest randomforest-result.txt randomforest-classifierModel.txt

Home modified by Rania Ibrahim

Rania Ibrahim — Wed, 02 Jul 2014 16:25:00 -0000

--- v1
+++ v2
@@ -1,8 +1,12 @@
-Welcome to your wiki!
+Welcome to wiki!

-This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].
+For Self-Learning:
+java -jar -Xms1700m SelfLearner.jar [trainFile] [testFile] [labelFile] [unlabeledFile] [Alpha] [ClassifierType(randomforest,svm)] [resultFile] [ClassifierModelFile]

-The wiki uses [Markdown](/p/selflearningcotraining/wiki/markdown_syntax/) syntax.
+For example:
+java -jar -Xms1700m SelfLearner.jar train.txt test.txt labels.txt unlabeled-normalized.txt 0.5 randomforest randomforest-result.txt randomforest-classifierModel.txt
+java -jar -Xms1700m SelfLearner.jar train.txt test.txt labels.txt unlabeled-normalized.txt 0.5 svm svm-result.txt svm-classifierModel.txt

-[[members limit=20]]
-[[download_button]]
+In the Release folder:
+train.txt and test.txt is the gene expressions experiment for breast cancer samples downloaded from GSE20713, unlabeled.txt is the gene expressions experiment for breast cancer samples downloaded from GSE16179 and unlabeled-normalized.txt is unlabeled.txt after applying log2-transformation on the expression values.
+

Home modified by Rania Ibrahim

Rania Ibrahim — Wed, 02 Jul 2014 15:52:47 -0000

Welcome to your wiki!

This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].

The wiki uses Markdown syntax.

Project Members:

Rania Ibrahim (admin)