sed-ml-discuss

[Miase-discuss] Paper at CMSB

[Nicolas Le n. <le...@eb...>]

Dear Colleagues,

Although SED-ML is very much a work in progress, the attention it raised so 
farm are an encouragement for outreaching activities and calls for 
contribution. Dagmar and I submitted a paper to CMSB08, a conference that 
will take place in Rostock on October 12-15. The paper has been accepted, 
and either Dagmar or I will give a presentation. Since it will be published 
in a conference proceeding, we thought it would not be a problem if only 
Dagmar and I were authors. We acknowledge the community input, and some of 
you are specifically named in the acknowledgment section. This conference 
proceeding does not of course preclude writing a "regular" article once 
SED-ML L1 is more feature-full, stable and supported. All of us will be 
authors of such an article, hopefully submitted to a good journal.

Best regards,

-- 
Nicolas LE NOVERE,  Computational Neurobiology,
EMBL-EBI, Wellcome-Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
Tel: +44(0)1223494521, Fax: 468, Mob: +44(0)7833147074  Skype:n.lenovere
http://www.ebi.ac.uk/~lenov, AIM: nlenovere, MSN: nle...@ho...

Re: [Miase-discuss] Paper at CMSB

[Fedor K. <fe...@bi...>]

Hello Nicolas,

could you please provide me with mentioned article about MIASE.

Other question: are any examples of XML files that are in agreement
with last version of MIASE-ML?

BioUML team would like to implement support of this format in new
version of BioUML workbench that will be presented during ICSB-2008.

Thank you in advance,
Fedor Kolpakov,
Institute of Systems Biology, Novosibirsk, Russia


NL> Dear Colleagues,

NL> Although SED-ML is very much a work in progress, the attention it raised so
NL> farm are an encouragement for outreaching activities and calls for
NL> contribution. Dagmar and I submitted a paper to CMSB08, a conference that
NL> will take place in Rostock on October 12-15. The paper has been accepted,
NL> and either Dagmar or I will give a presentation. Since it will be published
NL> in a conference proceeding, we thought it would not be a problem if only
NL> Dagmar and I were authors. We acknowledge the community input, and some of
NL> you are specifically named in the acknowledgment section. This conference
NL> proceeding does not of course preclude writing a "regular" article once
NL> SED-ML L1 is more feature-full, stable and supported. All of us will be
NL> authors of such an article, hopefully submitted to a good journal.

NL> Best regards,
NL> --
NL> Nicolas LE NOVERE,  Computational Neurobiology,
NL> EMBL-EBI, Wellcome-Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
NL> Tel: +44(0)1223494521, Fax: 468, Mob: +44(0)7833147074  Skype:n.lenovere
NL> http://www.ebi.ac.uk/~lenov, AIM: nlenovere, MSN: nle...@ho...

Re: [Miase-discuss] Paper at CMSB

[Nicolas Le nove`re <le...@eb...>]

Hi,

Fedor Kolpakov wrote:
> Hello Nicolas,
> 
> could you please provide me with mentioned article about MIASE.

We are currently correcting the paper according to the referee's comments. 
We will circulate it once final.

> Other question: are any examples of XML files that are in agreement
> with last version of MIASE-ML?

We will release new versions of SED-ML and examples soon (corrected to 
answer Frank's remark on surfaces)

Best regards,

-- 
Nicolas LE NOVERE,  Computational Neurobiology,
EMBL-EBI, Wellcome-Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
Tel: +44(0)1223494521, Fax: 468, Mob: +44(0)7833147074  Skype:n.lenovere
http://www.ebi.ac.uk/~lenov, AIM: nlenovere, MSN: nle...@ho...