Dear Johann,
The advised format to encode simulation results is the Numerical Markup Language:
https://github.com/numl/numl
This can be used for storing results or data used for parameter estimations.
Note that the SED-ML archive has been superseded by the COMBINE archive:
http://co.mbine.org/standards/omex
http://www.biomedcentral.com/1471-2105/15/369
Best regards
On 24/06/15 15:45, Johann Eicher wrote:
> Hi all,
>
> I am one of the developers of the online model simulator JWS Online
> (jjj.bio.vu.nl). We have incorporated a feature which allows users to
> upload and download SED-ML archives of time-course plots. We would like
> to include experimental data points in the archive for inclusion in the
> plots. Is this possible? If so, could you suggest how?
>
> For an example of a typical time simulation using JWS Online, you can
> follow this link, and click on the 'Time evolution' tab:
>
> http://jjj.bio.vu.nl/models/teusink/simulate/
>
> The SED-ML button in the top-righthand corner will generate a SED-ML
> archive of the plot.
>
> Thanks for your help!
>
--
Nicolas LE NOVERE, Babraham Institute, Babraham Campus Cambridge, CB22 3AT
Tel: +441223496433, Mob:+447833147074, twitter:@lenovere, Skype:n.lenovere
n.l...@gm..., http://orcid.org/0000-0002-6309-7327
http://lenoverelab.org/, http://lenoverelab.org/perso/lenov/
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