Re: [SED-ML-discuss] Fwd: [kisao:feature-requests] #31 Number of Runs

[Herbert S. <uw....@gm...>]

Chris can you give your arguments for needing a kiaso term for the number
of runs? I can't decide whether the size of the ensemble is part of the
algorithm or not. Usually it's not.

Unfortunately this wasn't discussed at harmony. There should be a wider
discussion on how to deal with ensemble runs for stochastic systems since
many of use will be affected. True, we already have repeated tasks but I
can't remember the arguments against using that for stochastic multiple
runs.

Herbert

On Tue, Jul 18, 2017 at 1:23 AM Nicolas Le Novere <n.l...@gm...>
wrote:

> Hi Chris,
>
> Last I heard, Anna was kind enough to update KiSAO when a new request came.
>
> What I am unclear about is where in KiSAO, would you like to put this? The
> number of run looks like a SED-ML attribute rather than a KiSAO term.
> Actually I thought that this was already covered by the current structures
> supporting repeated simulations.
>
> On 13/07/17 23:09, Chris Myers wrote:
> > Who maintains KISAO?  I would like to get this added ASAP.  It is
> critical if we want SED-ML to support stochastic simulation properly.
> >
> > Chris
> >
> >> Begin forwarded message:
> >>
> >> *From: *"Chris Myers" <cc...@us... <mailto:
> cc...@us...>>
> >> *Subject: **[kisao:feature-requests] #31 Number of Runs*
> >> *Date: *July 13, 2017 at 4:02:19 PM MDT
> >> *To: *"Ticket 31" <31...@fe... <mailto:
> 31...@fe...>>
> >> *Reply-To: *"Ticket 31" <31...@fe... <mailto:
> 31...@fe...>>
> >>
> >>
> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
> >>
> >> *[feature-requests:#31] <
> https://sourceforge.net/p/kisao/feature-requests/31/> Number of Runs*
> >>
> >> *Status:* open
> >> *Created:* Thu Jul 13, 2017 10:02 PM UTC by Chris Myers
> >> *Last Updated:* Thu Jul 13, 2017 10:02 PM UTC
> >> *Owner:* nobody
> >>
> >> This should indicate the number of runs that a simulation should
> perform. It would typically be used to specify the number of runs for a
> stochastic simulation.
> >>
> >>
> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
> >>
> >> Sent from sourceforge.net <http://sourceforge.net> because you
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> >>
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> >
>
>
> --
> Nicolas LE NOVERE,
> The Babraham Institute, Babraham Campus Cambridge, CB22 3AT
> Tel: +441223496433   Mob:+447833147074   http://lenoverelab.org
> orcid.org//0000-0002-6309-7327 Skype:n.lenovere twitter:@lenovere
>
>
>
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