Re: [SED-ML-discuss] SED-ML topics for HARMONY

[Herbert S. <uw....@gm...>]

A more collaborative service would be useful. Please no github if
possible, I can't use, when I have, I've screwed up the repository. If
you do use github I suppose I could request changes and someone else
upload them.

Herbert

On Tue, May 16, 2017 at 2:28 PM, David Nickerson
<dav...@gm...> wrote:
> Frank's C++ libSEDML has all the usual bindings, which I'm pretty sure
> include C and Java. Not sure what the state of the native Java library
> is, but we should make sure we get updates at HARMONY. There is also a
> native C library from Akira's group (I think), but again not sure what
> the status of that project is.
>
> The SED-ML specification is currently on SourceForge.net under
> subversion. See
> https://sourceforge.net/p/sed-ml/code/HEAD/tree/sed-ml/specification/trunk/level-1/version-3/
> for the L1V3. One of the issues the editors will be discussing at
> HARMONY is whether we should be moving to some other service.
>
> Cheers,
> David.
>
>
> On 17 May 2017 at 05:31, Herbert Sauro <uw....@gm...> wrote:
>> Can the v3 draft be put on something like sharelatex or overleaf so
>> everyone has access?
>>
>> Herbert
>>
>> On Tue, May 16, 2017 at 9:44 AM, Frank T. Bergmann <fbe...@ca...> wrote:
>>> Sounds like a plan, we did discuss the extension for curve styles at
>>> COMBINE. I'd be willing to help out if people wanted to work on
>>> implementation of the v3 draft.
>>>
>>> Also as always if you find issues with the C++ library, please let me know:
>>>
>>> https://github.com/fbergmann/libSEDML/issues
>>>
>>> or with the C# one / issue with the webtools:
>>>
>>> https://sourceforge.net/p/libsedml/tickets
>>>
>>> thanks
>>> Frank
>>>
>>>
>>> On Tue, May 16, 2017 at 5:55 PM, Herbert Sauro <uw....@gm...> wrote:
>>>> I guess one thing is add the material agreed to last year into the document.
>>>> Also a discussion on the state of the libraries would be useful, without
>>>> those we cannot easily use sedml.
>>>>
>>>> Herbert
>>>>
>>>> On Mon, May 15, 2017 at 9:59 PM David Nickerson <dav...@gm...>
>>>> wrote:
>>>>>
>>>>> Hi all,
>>>>>
>>>>> HARMONY is rapidly approaching in Seattle this June 26-30
>>>>> (http://co.mbine.org/events/HARMONY_2017). There is a preliminary
>>>>> draft agenda available via the website, with sessions rapidly filling
>>>>> up.
>>>>>
>>>>> Are there any specific topics that people would like to see discussed
>>>>> or worked on during HARMONY? There have been some offline discussions
>>>>> around clarifying some details in the specification, so we'll be
>>>>> aiming for at least one session on making sure the SED-ML L1V3 draft
>>>>> itself is a clear and unambiguous definition of SED-ML, but otherwise
>>>>> the focus for SED-ML will be trying to help get implementations of the
>>>>> L1V3 draft up and running so that we can start moving beyond.
>>>>>
>>>>> Cheers,
>>>>> David.
>>>>>
>>>>>
>>>>> --
>>>>>
>>>>>
>>>>> David Nickerson
>>>>> about.me/david.nickerson
>>>>>
>>>>>
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>
>
>
> --
>
>
> David Nickerson
> about.me/david.nickerson
>
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