Re: [SED-ML-discuss] SED-ML topics for HARMONY

[David N. <dav...@gm...>]

Frank's C++ libSEDML has all the usual bindings, which I'm pretty sure
include C and Java. Not sure what the state of the native Java library
is, but we should make sure we get updates at HARMONY. There is also a
native C library from Akira's group (I think), but again not sure what
the status of that project is.

The SED-ML specification is currently on SourceForge.net under
subversion. See
https://sourceforge.net/p/sed-ml/code/HEAD/tree/sed-ml/specification/trunk/level-1/version-3/
for the L1V3. One of the issues the editors will be discussing at
HARMONY is whether we should be moving to some other service.

Cheers,
David.


On 17 May 2017 at 05:31, Herbert Sauro <uw....@gm...> wrote:
> Can the v3 draft be put on something like sharelatex or overleaf so
> everyone has access?
>
> Herbert
>
> On Tue, May 16, 2017 at 9:44 AM, Frank T. Bergmann <fbe...@ca...> wrote:
>> Sounds like a plan, we did discuss the extension for curve styles at
>> COMBINE. I'd be willing to help out if people wanted to work on
>> implementation of the v3 draft.
>>
>> Also as always if you find issues with the C++ library, please let me know:
>>
>> https://github.com/fbergmann/libSEDML/issues
>>
>> or with the C# one / issue with the webtools:
>>
>> https://sourceforge.net/p/libsedml/tickets
>>
>> thanks
>> Frank
>>
>>
>> On Tue, May 16, 2017 at 5:55 PM, Herbert Sauro <uw....@gm...> wrote:
>>> I guess one thing is add the material agreed to last year into the document.
>>> Also a discussion on the state of the libraries would be useful, without
>>> those we cannot easily use sedml.
>>>
>>> Herbert
>>>
>>> On Mon, May 15, 2017 at 9:59 PM David Nickerson <dav...@gm...>
>>> wrote:
>>>>
>>>> Hi all,
>>>>
>>>> HARMONY is rapidly approaching in Seattle this June 26-30
>>>> (http://co.mbine.org/events/HARMONY_2017). There is a preliminary
>>>> draft agenda available via the website, with sessions rapidly filling
>>>> up.
>>>>
>>>> Are there any specific topics that people would like to see discussed
>>>> or worked on during HARMONY? There have been some offline discussions
>>>> around clarifying some details in the specification, so we'll be
>>>> aiming for at least one session on making sure the SED-ML L1V3 draft
>>>> itself is a clear and unambiguous definition of SED-ML, but otherwise
>>>> the focus for SED-ML will be trying to help get implementations of the
>>>> L1V3 draft up and running so that we can start moving beyond.
>>>>
>>>> Cheers,
>>>> David.
>>>>
>>>>
>>>> --
>>>>
>>>>
>>>> David Nickerson
>>>> about.me/david.nickerson
>>>>
>>>>
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>>>
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>>
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David Nickerson
about.me/david.nickerson