Re: [SED-ML-discuss] Custom Annotations in SEDML

[David N. <dav...@gm...>]

HI Nisha,

You can use annotations in SED-ML, see the "annotation" element in the
SED-ML specification.

If you are using the C++ libSEDML, you can see an example dealing with
annotations in the 'print_sedml` example
(https://github.com/fbergmann/libSEDML/blob/master/examples/c%2B%2B/print_sedml.cpp).
If you are using a different library providing the getNumChildren()
method you'll need to provide some details.

As far as I know, the libSBML ASTNode objects and methods are only
used by libSEDML to handle the MathML in SED-ML.

Cheers,
David.


On Tue, Dec 20, 2016 at 8:25 PM, Nisha Viswan <ni...@nc...> wrote:
> Dear all,
>
> I would like to know whether custom-annotation-tags can be used in SEDML,
> just like in SBML. I found ASTNode functions work well for
> custom-annotations in SBML files but not in SEDML(L1V1).
> For example, when I use getNumChildren() for custom-annotations, I get a
> random number in SEDML (huge number) but it works fine for SBML files.
>
> I am not sure whether I am missing something very obvious, and I would
> really appreciate if somebody could help out with a direct fix or any other
> solution to overcome this.
>
> Regards,
> Nisha Viswan
>
>
>
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David Nickerson
about.me/david.nickerson