Re: [SED-ML-discuss] L1V1 -> L1V2 conversion & applyChanges

[Matthias K. <kon...@go...>]

Hi Frank,
This helps a lot. Could you post a link to the c# source repository?
Thanks. M
On Feb 23, 2016 7:25 PM, "Frank Bergmann" <fbe...@ca...> wrote:

>
> > On Feb 23, 2016, at 5:31 PM, Matthias König <kon...@go...>
> wrote:
> >
> > Hi all,
> > I have some questions in regard to libsedml (python bindings)
> >
> > [1] Is there a conversion function to convert SedDocuments from L1V1 to
> L1V2 similar to libsbml? This would be very nice because than I have to
> read/implement only one specification.
> > Should L1V1 still be supported or did the majority of the community
> already move on to L1V2 so that I can just ignore L1V1?
> >
>
> L1V2 is a strict superset of L1V1, so if you just treat every model you
> read as if it were an L1V2 model, then your code will work no matter
> whether it is an l1v1 or l1v2 model. A converter as such is not necessary
> or even possible there is just no way to express the l1v2 features in l1v1.
>
> > [2] I looked for a helper function which gives me for a model id the XML
> with all the applied changes. I.e. a function which reads the XML from the
> model source, and applies all the changes defined to the XML (in the
> process handling the model dependencies and the stepwise application of
> changes).
> > This would be a very helpful function which everybody working with sedml
> needs and probably reimplements.
> > Something like
> > sedml_doc.getProcessedModelXML(model_id)
> >
>
> I take contributions for the C++ project. I currently do not have the time
> to add that. My C# library has all these features. so I could expose a SOAP
> service / REST endpoint, or a command line tool, that would make it
> possible to get the processed model.
>
> Cheers
> Frank
>
> > The best
> > Matthias
> >
> >
> > --
> > Matthias König
> > Junior Group Leader LiSym - Systems Medicine of the Liver
> > Humboldt-University Berlin, Institute for Theoretical Biology
> >   https://www.livermetabolism.com
> > kon...@go...
> > Tel: +49 30 20938450
> > Tel: +49 176 81168480
> >
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