Re: [SED-ML-discuss] L1V1 -> L1V2 conversion & applyChanges

[Frank B. <fbe...@ca...>]

> On Feb 23, 2016, at 5:31 PM, Matthias König <kon...@go...> wrote:
> 
> Hi all,
> I have some questions in regard to libsedml (python bindings)
> 
> [1] Is there a conversion function to convert SedDocuments from L1V1 to L1V2 similar to libsbml? This would be very nice because than I have to read/implement only one specification. 
> Should L1V1 still be supported or did the majority of the community already move on to L1V2 so that I can just ignore L1V1?
> 

L1V2 is a strict superset of L1V1, so if you just treat every model you read as if it were an L1V2 model, then your code will work no matter whether it is an l1v1 or l1v2 model. A converter as such is not necessary or even possible there is just no way to express the l1v2 features in l1v1. 

> [2] I looked for a helper function which gives me for a model id the XML with all the applied changes. I.e. a function which reads the XML from the model source, and applies all the changes defined to the XML (in the process handling the model dependencies and the stepwise application of changes).
> This would be a very helpful function which everybody working with sedml needs and probably reimplements. 
> Something like
> sedml_doc.getProcessedModelXML(model_id)
> 

I take contributions for the C++ project. I currently do not have the time to add that. My C# library has all these features. so I could expose a SOAP service / REST endpoint, or a command line tool, that would make it possible to get the processed model. 

Cheers
Frank

> The best
> Matthias
> 
> 
> -- 
> Matthias König
> Junior Group Leader LiSym - Systems Medicine of the Liver
> Humboldt-University Berlin, Institute for Theoretical Biology
>   https://www.livermetabolism.com
> kon...@go...
> Tel: +49 30 20938450
> Tel: +49 176 81168480
> ------------------------------------------------------------------------------
> Site24x7 APM Insight: Get Deep Visibility into Application Performance
> APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month
> Monitor end-to-end web transactions and take corrective actions now
> Troubleshoot faster and improve end-user experience. Signup Now!
> http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140_______________________________________________
> SED-ML-discuss mailing list
> SED...@li...
> https://lists.sourceforge.net/lists/listinfo/sed-ml-discuss