Re: [SED-ML-discuss] Xpath expression in SED-ML Spec

[Nicolas Le N. <n.l...@gm...>]

Hi Felix,

That is a great showcase of SED-ML actually! Thanks for sharing.

On 02/12/14 09:50, Felix Winter wrote:
> Hi again.
>
> Thanks for all this valuable feedback. As I guess someone may wonder why I care
> about this topic at all, I decided to share a little bit of the background story
> which brought up the question. Maybe someone can use it as a use case for
> SED-ML.
>
> The company I currently work for is using a quality management system (DIN ISO
> 9001 certified). As part of this there are regulary audits. In one of the last
> audits, the question arose how I check the validity of my modelling results,
> especially with respect to the correct implementation and calling of the
> underlying ode solver. One idea I currently try to test for its feasibility is
> to automatically verify the model simulation in a software different to the one
> which was used to build the model (which is mainly COPASI and some handwritten
> C++ code). As I already follow the development of SED-ML for some time, I
> assumed it would be the ideal language to implement a system that does what I
> need: A precise description of the simulation experiment which can be supplied
> to different software packages to run the same simulation. As I consider it very
> unlikely that two implentations share the same error, I would consider the
> simulation correct if the output of the independent simulations is equal.
>
> To make sure that I really have the same output using the same SED-ML file
> (assuming the ode solvers are correct) I need to guarantee that the SED-ML file
> is always interpreted in the same way. While checking the current spec for
> possible challenges I came across the use of Xpath. And that's how my inital
> question arose.
>
> With best thanks,
>
> Felix
>
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Nicolas LE NOVERE, Babraham Institute, Babraham Campus Cambridge, CB22 3AT
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