[SED-ML-discuss] Nested Proposal v2

[Frank T. B. <fbe...@ca...>]

Hello, 

As many of you know early in 2010 I proposed a simple nested simulation
experiment for SED-ML. Of course that was well before the SED-ML spec was
released. Since then I listened to your feedback and made adjustments. With
the start of the new year it is time to get the Nested Simulation Proposal
for SED-ML ready for wide-spread adoption. I believe nested simulations are
vital for SED-ML so that we can cover a much larger variety of simulation
experiments.  

I've taken these past weeks to fully flesh out all the details and the
document is now available from Nature Proceedings: 

http://precedings.nature.com/documents/4257/version/2

Unlike the last version this time there is a full description of each
element along with examples. If you only have a couple of seconds, have a
look at my blog where you see the examples: 

http://frank-fbergmann.blogspot.com/2012/01/sed-ml-nested-simulation-proposa
l-v2.html

Or try the SED-ML Web Tools, that I updated to be able to simulate the
nested experiment: 

http://sysbioapps.dyndns.org/SED-ML_Web_Tools/

I look forward to your feedback!


Best
Frank