Re: [Miase-discuss] sed-ml library?

[Frank B. <fbergman@u.washington.edu>]

> 
> Now, MIRIAM imposes that a model's annotation carry "The time and date
> of
> creation, and the date and time of last modification" (rule 4, box 4 of
> the
> paper). In SBML we have elements to encode that. One possibility would
> be
> to implement tests in SED-ML. The model processing could only be
> performed
> if the source model passed the tests. Those tests could be anything.
> But
> the timestamps could be subjected to one. "if date is less than X, then
> proceed, otherwise stop and send a message".
> 
> Which brings me to another point: Should-we need a message throwing
> system,
> or is-it a tool problem?

I guess the question is what you would like to have happen. When you try and
run a description file, would you feel happy about such messages? Would you
know what to do? Personally I like to circumvent the whole issue, and I'll
keep the model with the description. Then I can guarantee, that the model
that was run by the simulator is the one references by the description file.


We should first resolve more pressing matters such as: 

- where does the 'time' come from
- which transformations are allowed in DataGenerator-mathML
- how do we reference measurement data, and in what format should it be so
that it is accessible for use in datagenerators
- other minor issues:
	- other tasks but uniformTimeCourse

Cheers
Frank

> 
> --
> Nicolas LE NOVERE, Computational Neurobiology, EMBL-EBI, Wellcome-Trust
> Genome Campus, Hinxton CB101SD UK, Mob:+447833147074, Tel:+441223494521
> Fax:468, Skype:n.lenovere, AIM:nlenovere, MSN:nle...@ho...
> http://www.ebi.ac.uk/~lenov/, http://www.ebi.ac.uk/compneur/
> 
> 
> 
> -----------------------------------------------------------------------
> -------
> This SF.net email is sponsored by:
> SourcForge Community
> SourceForge wants to tell your story.
> http://p.sf.net/sfu/sf-spreadtheword
> _______________________________________________
> Miase-discuss mailing list
> Mia...@li...
> https://lists.sourceforge.net/lists/listinfo/miase-discuss