Re: [Miase-discuss] new name for "MIASE-ML"

[Henning S. <he...@hs...>]

Well, along this reasoning "SBML" would cover just EVERYTHING from lab to
insilico and back? The whole Systems Biology.

Something I already suggested in Yokohama 2006 was:

SBmML: models (well one would pbly have to keep the name as SBML)
SBeML: Insilico experiment descriptions (meaning: changes in the models)
SBdML: Representation of measurement data ... time series and steady-state

       to start with

That could be nicely augmented by: 

SBsML: for simulation settings
SBxML: combining SBmML, SBeML, SBdML, and SBsML
       (alternatively: if SBML can be exchanged for SBmML ... SBxML => SBML
would make sense).

processML: for postprocessing of data
plotML: for representation of plots of given data




> -----Original Message-----
> From: mia...@li... [mailto:miase-discuss-
> bo...@li...] On Behalf Of Nicolas Le novère
> Sent: Dienstag, 3. Juni 2008 13:30
> To: mia...@li...
> Subject: Re: [Miase-discuss] new name for "MIASE-ML"
> 
> Henning Schmidt wrote:
> >
> >> SBEXML (Systems Biology Experimentation ML)
> >
> > I really like that one!!!
> 
> Certainly not. "Systems Biology Experimentation" would cover all the wet
> experiments run during the course of Systems Biology projects. Whether you
> like it or not, what we are trying is to describe the simulation process.
> How to got from the model description (SBML) to the numerical results.
> That's all. And that is already a daunting task. But we do not want to
> describe a quantitative western blot.
> 
> --
> Nicolas LE NOVERE,  Computational Neurobiology,
> EMBL-EBI, Wellcome-Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
> Tel: +44(0)1223494521, Fax: 468, Mob: +44(0)7833147074  Skype:n.lenovere
> http://www.ebi.ac.uk/~lenov, AIM: nlenovere, MSN: nle...@ho...
> 
> -------------------------------------------------------------------------
> This SF.net email is sponsored by: Microsoft
> Defy all challenges. Microsoft(R) Visual Studio 2008.
> http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/
> _______________________________________________
> Miase-discuss mailing list
> Mia...@li...
> https://lists.sourceforge.net/lists/listinfo/miase-discuss