Re: [Miase-discuss] new name for "MIASE-ML"

[Christian K. <tr...@mi...>]

Nicolas Le Novere schrieb:
> Henning Schmidt wrote:
>   
>> Just again ... if MIASE also targets at the representation of plots ...
>> and people want to plot simulation results against measurement data ...
>>
>> then "SIM" would not really be correct ... or?
>>     
>
> Yes, it is. We can use experimental data at two different levels of the procedure: We can use them to find parameters. That is without doubt simulation work. And we can use them to plot the results of simulation against. If we describe how we take a model, how we modify it, how we run a simulation procedure using it, plotting the results is part of the job. Yes, I agree, we will stretch the notion of simulation a lot. Steady-state procedure are not strictly speaking simulations. But hey, we need a word ok? We could use Modeling Experiment Markup Language, but that would be very confusing IMHO. Not just because of confusion with SBML and MML, but also because we cover a tiny bit of modeling (think molecular modeling, etc.) 
>
>   
>> And if we decide to not include references to measurement data ... will we
>> then develop a second MIASE type of representation format for simulation
>> experiments that are used to plot figures ... this time INCLUDING
>> measurement data?
>>     
>
> Actually measurement data are just another kind of external data-set. So what we will probably end-up doing in Level 2 or whatever, will be to include facility to input numerical data which generation is not described in whateverML file. 
>
>   

SBEXML (Systems Biology Experimentation ML)

Christian.

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Christian Knuepfer
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