SCWC-bio-simulator

Brought to you by: aldinuc, drocco, troina

Last Update: 2014-05-15

Get an email when there's a new version of SCWC-bio-simulator

The Calculus of Wrapped Compartments is a variant of the Calculus of Looping Sequences. CWC strongly simplifies the development of automatic tools for the analysis of biological systems. The SCWC-sim is a OCaml implementation of CWC calculus.

Features

stochastic simulations of biological processes
rating function to compute the probability of each reaction

Project Activity

See All Activity >

Follow SCWC-bio-simulator

SCWC-bio-simulator Web Site

Other Useful Business Software

Veeam Data Platform v13.1 - Get Your Free Trial

Secure by design, portable by default. Recover clean, fast, anywhere. Start a free trial.

Try Veeam Data Platform today. Experience the unified platform that's secure by design, portable by default, and proven to recover clean, fast, and anywhere.

Try it Free

Rate This Project

User Reviews

Be the first to post a review of SCWC-bio-simulator!

Additional Project Details

Registered

2010-02-15

Report inappropriate content

Ship Agents Faster

Transform your applications and workflows into powerful agentic systems at global scale.

Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.

Start Free

Recommended Projects

PiET: Pi Calculus Equivalences Tester
PiET is a verification tool for ten behavioural equivalences for the Pi Calculus.
ProVerif Editor
An editor to edit and check protocols specified in SPI-calculus using ProVerif.
PyNaC
PyNaC is a Python package for coordinate-free symbolic math, based on Geometric Algebra (Clifford Algebra) and Geometric Calculus (Clifford Analysis).
CWC Simulator
This is an implementation of CWC (Calculus of Wrapped Compartments), a rewriting-based calculus for the representation and simulation of biological systems.
smib
smib is one of the smallest and simplest computer algebra system in the world, but simple does not mean simplistic. Using smib you can explore many branches of mathematics (e.g. number theory, algebra, calculus, numerical analysis, differential geometry, probability and stochastic calculus) and also some physics (e.g. electromagnetism and quantum mechanics).. By simple you can understand easy to program (smib is a dynamically typed language, with strong affinity to recursivity, programs are often short and powerful and maybe useful for teaching), and also easy to modify (source code is free, written in C language, and based on notions of stacks and lists). In this version : - some bugs corrected - new examples in smib-0.48/documentation/application/eigenmath/ those examples are here : eigenmath.org (with explanations), they are just adapted to smib. smib roots are here : http://www.eigenmath.org/ You may also like Davide Della Casa's work : http://algebrite.org