Re: [scipion-users] Install on computer cluster

[Pablo C. <pc...@cn...>]

Sorry if we missed this.

Yes,  you and anyone else is welcome to join our discord workspace we 
you'll get more direct contact with users and developers.

Regarding pySeg...you need very specific version of gcc and g++ (from 5 
to 7 are the only valid ones). Not sure if you need something else.

Latest version of the plugin is doing this check and informing you is 
not compatible versions are found.


On 29/1/23 18:48, Grigory Sharov wrote:
> Dear Chuchu,
>
> If you haven't got any replies by now, I'd suggest joining our discord 
> channel (https://discord.gg/MXWSKvy2). You might be able to reach 
> pyseg plugin developers there.
>
> I have installed pyseg only once (manually, it has failed via scipion) 
> and it was not on a cluster. I might share some brief compilation 
> instructions on Monday.
>
> Best regards,
> Grigory
>
> --------------------------------------------------------------------------------
> Grigory Sharov, Ph.D.
>
> MRC Laboratory of Molecular Biology,
> Francis Crick Avenue,
> Cambridge Biomedical Campus,
> Cambridge CB2 0QH, UK.
> tel. +44 (0) 1223 267228 <tel:+44%201223%20267228>
> e-mail: gs...@mr...
>
>
> On Fri, Jan 27, 2023 at 3:03 PM Chuchu Wang <cc...@st...> wrote:
>
>     Dear Scipion Team,
>
>     Happy New Year!
>     I tried to install Scipion and the PySeg plug-in on our computer
>     cluster, but because of many conflicts, it failed to work.
>     I wonder if you know any Stanford Sherlock users who successfully
>     installed your app (esp. PySeg plug-in) and ran it smoothly, I
>     would like to ask for his/her favor to share the installation steps.
>
>     Best,
>     Chuchu
>
>     --
>
>     Chuchu Wang, Ph.D.
>
>     Postdoc | Axel T. Brunger Lab
>
>     Molecular & Cellular Physiology | Stanford Medicine
>     Howard Hughs Medical Institute at Stanford
>
>     Clark Center Rm. E300C,
>
>     318 Campus Drive, CA. 94305
>
>
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-- 
Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team*