Re: [scipion-users] Segmentation error while running Scipion

[Pablo C. <pc...@cn...>]

Hi Jessie:

the ">>> WARNING: Image library not found!" means xmipp was not 
installed properly.

"scipion3 installb xmippSrc" should do it.

The next error, "sh: line 1: 36766 Segmentation fault      (core dumped) 
python -m scipion "


Well, we are going to need more information. Does it happens when 
launching Scipion? or while using the GUI.

On 27/1/23 15:04, Malit Jessie James Limlingan wrote:
> Good day. I recently installed Scipion, and was following this guide 
> Denoising, Membrane Segmentation and Annotation and Directional 
> Picking 
> <https://scipion-em.github.io/docs/release-3.0.0/docs/user/denoising_mbSegmentation_pysegDirPicking/tomosegmemTV-pySeg-workflow.html#tomosegmemtv-pyseg-workflow>. 
> I can follow the steps until tomogram denoting, however after 
> installing scipion-em-tomosegmemtv 
> <https://github.com/scipion-em/scipion-em-tomosegmemtv> and 
> scipion-em-pyseg <https://github.com/scipion-em/scipion-em-pyseg>, 
> whenever I run Scipion I come across with this error;
>
> Scipion v3.0.12 - Eugenius
>
>  >>> WARNING: Image library not found!
>   > Please install Xmipp to get full functionality.
> (Configuration->Plugins->scipion-em-xmipp -> expand, in Scipion plugin 
> manager window)
>
>
> /data/Jessie/miniconda3/envs/scipion3/lib/python3.8/site-packages/_distutils_hack/__init__.py:33: 
> UserWarning: Setuptools is replacing distutils.
> warnings.warn("Setuptools is replacing distutils.")
> sh: line 1: 36766 Segmentation fault      (core dumped) python -m scipion
>
> Can you help us resolve the error? Thank you very much!
>
> Regards,
> Jessie
>
>
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-- 
Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team*