Re: [scipion-users] Problem importing particles from Relion

[Grigory S. <sha...@gm...>]

Hi,

You most likely have a duplicated rlnSgdStepsizeScheme row in the
corresponding run_optimiser.star file. If you find and delete the
duplicate, the import of the run_data.star file will work


Best regards,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.

MRC Laboratory of Molecular Biology,
Francis Crick Avenue,
Cambridge Biomedical Campus,
Cambridge CB2 0QH, UK.
tel. +44 (0) 1223 267228 <+44%201223%20267228>
e-mail: gs...@mr...


On Tue, Jan 17, 2023 at 4:51 PM Leonardo Talachia Rosa via scipion-users <
sci...@li...> wrote:

> Dear Scipion team,
> I hope you are well.
>
> I am trying to import a run_data.star file from relion 4.0, using the
> Import particles protocol. This star file is an output of a 3D refine done
> directly in relion.
> The import fails giving the error message "invalid literal for int() with
> base 10: '0.076970' "
> I checked the .star file, and that is a value in the FOM tab of the first
> particle.
> The FOM values should not be a problem, since they are assigned in the
> moment of picking, right?
> I am new to scipion so any ideas would be welcome.
>
> Kind wishes,
> Leonardo
>
> --
> *************************
> Leonardo TALACHIA ROSA, PhD
> PostDoctoral Researcher
> Microbiology and Structural Biology
> Instituto de Química, Universidade de São Paulo - IQ-USP
> Av. Prof. Lineu Prestes, 748 - Butantã, São Paulo - SP
> **************************
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