[scipion-users] Relion 3D initial model failiure

[Bisikalo, K. <kyr...@he...>]

Hello,

I have been trying to process a small dataset (~800 particles), but the 3D initial model keeps failing mid-run. It displays the following error: "Protocol failed: Command ' relion_refine --i Runs/000899_ProtRelionInitialModel/input_particles.star --particle_diameter 682 --ctf  --zero_mask  --o Runs/000899_ProtRelionInitialModel/extra/relion --oversampling 1 --pad 1 --tau2_fudge 3.0 --flatten_solvent  --sym i2 --iter 150 --grad  --K 1 --denovo_3dref  --healpix_order 1 --offset_range 6 --offset_step 2 --auto_sampling  --dont_combine_weights_via_disc  --preread_images  --pool 3 --gpu   --j 2' died with <Signals.SIGSEGV: 11>."

What can be done to amend this?
I have attached the log files to this email.

Faithfully yours,
Kyrylo Bisikalo
Erasmus Mundus Joint Master's Degree program
"Advanced Spectroscopy in Chemistry"