Re: [scipion-users] scipion - singularity - HPC

[Mohamad H. <moh...@so...>]

Hello Helder, 

Have you taken a look at the host configuration here ( [ https://scipion-em.github.io/docs/release-3.0.0/docs/scipion-modes/host-configuration.html | https://scipion-em.github.io/docs/release-3.0.0/docs/scipion-modes/host-configuration.html ] )? 

Best of luck, 
Mohamad 


From: "Helder Veras Ribeiro Filho" <hel...@ln...> 
To: sci...@li... 
Sent: Wednesday, November 2, 2022 5:07:53 PM 
Subject: [scipion-users] scipion - singularity - HPC 

Hello scipion group! 

I'm trying to launch Scipion from a singularity container in an HPC with the slurm as a scheduler. The container works fine and I'm able to execute Scipion routines correctly without using a queue. The problem is when I try to send Scipion jobs using the queue in the Scipion interface. I suppose that it is a slurm/singularity configuration problem. 
Could anyone who was successful in sending jobs to queue from a singularity launched scipion help me with some tips? 

Best, 

Helder 




Helder Veras Ribeiro Filho, PhD 
Brazilian Biosciences National Laboratory - LNBio 
Brazilian Center for Research in Energy and Materials - CNPEM 
10,000 Giuseppe Maximo Scolfaro St. 
Campinas, SP - Brazil 13083-100 
+55 (19) 3512-1255 




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