Re: [scipion-users] export particles and metadata

[Alberto G. M. <alb...@cn...>]

Hello Jianhao,

You just have to write YES (or press Enter) or no. Is safer to ptype no 
and generate a new config file '/./xmipp config/'

Thanks

On 4/6/22 1:08, C.J. wrote:
> Hi, I try to install xmipp but there is a question in the output log 
> (see attached picture). How can I response to the question? I can't 
> click it or type in the log. It's only a text display in the output log.
>
> Thanks!
> Jianhao
>
> <jam...@gm...> 于2022年5月27日周五 15:23写道：
>
>     I think you need xmipp. emlib can point to that.
>
>     Best wishes
>     James
>
>>     On 27 May 2022, at 23:53, C.J. <bi...@gm...> wrote:
>>
>>     
>>     Hi,
>>
>>     I have some issue (see the attached picture) while exporting
>>     particles. Did I miss something when installing SCIPION?
>>
>>     Thanks!
>>     Jianhao
>>
>>     Serban Ilca <SI...@ny...> 于2022年5月27日周五 12:14写道：
>>
>>         Hi Jianhao,
>>
>>         As Grigory pointed out, you can indeed run 'relion - export
>>         particles' on the output of 'localrec - extract subparticles'
>>         to accomplish what you want.
>>
>>         Cheers,
>>         Serban
>>         ------------------------------------------------------------------------
>>         *From:* C.J. <bi...@gm...>
>>         *Sent:* 27 May 2022 13:18
>>         *To:* Mailing list for Scipion users
>>         <sci...@li...>
>>         *Subject:* Re: [scipion-users] export particles and metadata
>>         Hi, these particles are re-extracted by localrec. Soooo, i
>>         don't think relion can do that.
>>
>>         Jianhao
>>
>>         Grigory Sharov <sha...@gm...> 于2022年5月27日周五
>>         02:26写道：
>>
>>             Hi,
>>
>>             I don't know about localrec plugin but relion plugin has
>>             an export particle protocol that does exactly that.
>>
>>             Best regards,
>>             Grigory
>>
>>             --------------------------------------------------------------------------------
>>             Grigory Sharov, Ph.D.
>>
>>             MRC Laboratory of Molecular Biology,
>>             Francis Crick Avenue,
>>             Cambridge Biomedical Campus,
>>             Cambridge CB2 0QH, UK.
>>             tel. +44 (0) 1223 267228 <tel:+44%201223%20267228>
>>             e-mail: gs...@mr...
>>
>>
>>             On Fri, May 27, 2022 at 12:32 AM C.J. <bi...@gm...>
>>             wrote:
>>
>>                 Hi,
>>
>>                 I run localrec in SCIPION v3.0.9 to extract
>>                 subparticles. But how can I export both particles and
>>                 metadata into relion3 star file and particles?
>>
>>                 Thank you!
>>                 Jianhao
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-- 
- Alberto GM -