Re: [scipion-users] export particles and metadata

[C.J. <bi...@gm...>]

Hi, I try to install xmipp but there is a question in the output log (see
attached picture). How can I response to the question? I can't click it or
type in the log. It's only a text display in the output log.

Thanks!
Jianhao

<jam...@gm...> 于2022年5月27日周五 15:23写道：

> I think you need xmipp. emlib can point to that.
>
> Best wishes
> James
>
> On 27 May 2022, at 23:53, C.J. <bi...@gm...> wrote:
>
> 
> Hi,
>
> I have some issue (see the attached picture) while exporting particles.
> Did I miss something when installing SCIPION?
>
> Thanks!
> Jianhao
>
> Serban Ilca <SI...@ny...> 于2022年5月27日周五 12:14写道：
>
>> Hi Jianhao,
>>
>> As Grigory pointed out, you can indeed run 'relion - export particles' on
>> the output of 'localrec - extract subparticles' to accomplish what you want.
>>
>> Cheers,
>> Serban
>> ------------------------------
>> *From:* C.J. <bi...@gm...>
>> *Sent:* 27 May 2022 13:18
>> *To:* Mailing list for Scipion users <sci...@li...
>> >
>> *Subject:* Re: [scipion-users] export particles and metadata
>>
>> Hi, these particles are re-extracted by localrec. Soooo, i don't think
>> relion can do that.
>>
>> Jianhao
>>
>> Grigory Sharov <sha...@gm...> 于2022年5月27日周五 02:26写道：
>>
>> Hi,
>>
>> I don't know about localrec plugin but relion plugin has an export
>> particle protocol that does exactly that.
>>
>> Best regards,
>> Grigory
>>
>>
>> --------------------------------------------------------------------------------
>> Grigory Sharov, Ph.D.
>>
>> MRC Laboratory of Molecular Biology,
>> Francis Crick Avenue,
>> Cambridge Biomedical Campus,
>> Cambridge CB2 0QH, UK.
>> tel. +44 (0) 1223 267228 <+44%201223%20267228>
>> e-mail: gs...@mr...
>>
>>
>> On Fri, May 27, 2022 at 12:32 AM C.J. <bi...@gm...> wrote:
>>
>> Hi,
>>
>> I run localrec in SCIPION v3.0.9 to extract subparticles. But how can I
>> export both particles and metadata into relion3 star file and particles?
>>
>> Thank you!
>> Jianhao
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