Re: [scipion-users] export particles and metadata

[Pablo C. <pc...@cn...>]

Hi! Do you see any error message in your terminal when opening Scipion?

On 27/5/22 23:52, C.J. wrote:
> Hi,
>
> I have some issue (see the attached picture) while exporting 
> particles. Did I miss something when installing SCIPION?
>
> Thanks!
> Jianhao
>
> Serban Ilca <SI...@ny...> 于2022年5月27日周五 12:14写道：
>
>     Hi Jianhao,
>
>     As Grigory pointed out, you can indeed run 'relion - export
>     particles' on the output of 'localrec - extract subparticles' to
>     accomplish what you want.
>
>     Cheers,
>     Serban
>     ------------------------------------------------------------------------
>     *From:* C.J. <bi...@gm...>
>     *Sent:* 27 May 2022 13:18
>     *To:* Mailing list for Scipion users
>     <sci...@li...>
>     *Subject:* Re: [scipion-users] export particles and metadata
>     Hi, these particles are re-extracted by localrec. Soooo, i don't
>     think relion can do that.
>
>     Jianhao
>
>     Grigory Sharov <sha...@gm...> 于2022年5月27日周五
>     02:26写道：
>
>         Hi,
>
>         I don't know about localrec plugin but relion plugin has an
>         export particle protocol that does exactly that.
>
>         Best regards,
>         Grigory
>
>         --------------------------------------------------------------------------------
>         Grigory Sharov, Ph.D.
>
>         MRC Laboratory of Molecular Biology,
>         Francis Crick Avenue,
>         Cambridge Biomedical Campus,
>         Cambridge CB2 0QH, UK.
>         tel. +44 (0) 1223 267228 <tel:+44%201223%20267228>
>         e-mail: gs...@mr...
>
>
>         On Fri, May 27, 2022 at 12:32 AM C.J. <bi...@gm...> wrote:
>
>             Hi,
>
>             I run localrec in SCIPION v3.0.9 to extract subparticles.
>             But how can I export both particles and metadata into
>             relion3 star file and particles?
>
>             Thank you!
>             Jianhao
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-- 
Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team*