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Re: [scipion-users] export particles and metadata
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From: <jam...@gm...> - 2022-05-27 22:22:55
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I think you need xmipp. emlib can point to that. Best wishes James > On 27 May 2022, at 23:53, C.J. <bi...@gm...> wrote: > > > Hi, > > I have some issue (see the attached picture) while exporting particles. Did I miss something when installing SCIPION? > > Thanks! > Jianhao > > Serban Ilca <SI...@ny...> 于2022年5月27日周五 12:14写道： >> Hi Jianhao, >> >> As Grigory pointed out, you can indeed run 'relion - export particles' on the output of 'localrec - extract subparticles' to accomplish what you want. >> >> Cheers, >> Serban >> From: C.J. <bi...@gm...> >> Sent: 27 May 2022 13:18 >> To: Mailing list for Scipion users <sci...@li...> >> Subject: Re: [scipion-users] export particles and metadata >> >> Hi, these particles are re-extracted by localrec. Soooo, i don't think relion can do that. >> >> Jianhao >> >> Grigory Sharov <sha...@gm...> 于2022年5月27日周五 02:26写道： >> Hi, >> >> I don't know about localrec plugin but relion plugin has an export particle protocol that does exactly that. >> >> Best regards, >> Grigory >> >> -------------------------------------------------------------------------------- >> Grigory Sharov, Ph.D. >> >> MRC Laboratory of Molecular Biology, >> Francis Crick Avenue, >> Cambridge Biomedical Campus, >> Cambridge CB2 0QH, UK. >> tel. +44 (0) 1223 267228 >> e-mail: gs...@mr... >> >> >> On Fri, May 27, 2022 at 12:32 AM C.J. <bi...@gm...> wrote: >> Hi, >> >> I run localrec in SCIPION v3.0.9 to extract subparticles. But how can I export both particles and metadata into relion3 star file and particles? >> >> Thank you! >> Jianhao >> _______________________________________________ >> scipion-users mailing list >> sci...@li... >> https://lists.sourceforge.net/lists/listinfo/scipion-users >> _______________________________________________ >> scipion-users mailing list >> sci...@li... >> https://lists.sourceforge.net/lists/listinfo/scipion-users >> _______________________________________________ >> scipion-users mailing list >> sci...@li... >> https://lists.sourceforge.net/lists/listinfo/scipion-users > _______________________________________________ > scipion-users mailing list > sci...@li... > https://lists.sourceforge.net/lists/listinfo/scipion-users |
