From: Carlos H. F. <car...@so...> - 2021-12-08 16:43:15
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Dear all, I'm trying to run a 2D classification using cryosparc inside Scipion and I'm facing the error below? Does anyone have any idea what this error might be? Thanks in advance, Carlos Fernandes Traceback (most recent call last): 00002: File "/home/impmc/scipion/.scipion3/lib/python3.8/site-packages/pyworkflow/protocol/protocol.py", line 201, in run 00003: self._run() 00004: File "/home/impmc/scipion/.scipion3/lib/python3.8/site-packages/pyworkflow/protocol/protocol.py", line 252, in _run 00005: resultFiles = self._runFunc() 00006: File "/home/impmc/scipion/.scipion3/lib/python3.8/site-packages/pyworkflow/protocol/protocol.py", line 248, in _runFunc 00007: return self._func(*self._args) 00008: File "/home/impmc/scipion/.scipion3/lib/python3.8/site-packages/cryosparc2/protocols/protocol_base.py", line 97, in convertInputStep 00009: self._importParticles() 00010: File "/home/impmc/scipion/.scipion3/lib/python3.8/site-packages/cryosparc2/protocols/protocol_base.py", line 200, in _importParticles 00011: self.importedParticles = doImportParticlesStar(self) 00012: File "/home/impmc/scipion/.scipion3/lib/python3.8/site-packages/cryosparc2/utils.py", line 306, in doImportParticlesStar 00013: import_particles = enqueueJob(className, protocol.projectName, protocol.workSpaceName, 00014: File "/home/impmc/scipion/.scipion3/lib/python3.8/site-packages/cryosparc2/utils.py", line 385, in enqueueJob 00015: exitCode, cmdOutput = runCmd(make_job_cmd) 00016: File "/home/impmc/scipion/.scipion3/lib/python3.8/site-packages/cryosparc2/utils.py", line 442, in runCmd 00017: raise Exception("%s failed --> Exit code %s, message %s" % (cmd, exitCode, cmdOutput)) 00018: Exception: /home/impmc/cryosparc_new/cryosparc_master/bin/cryosparcm cli 'make_job("import_particles","P3","W2", "", "None", "None", {"particle_meta_path": "/mnt/data1/mauricio/cyclo-pasteur/scipion/Cyclodextrine/Runs/002524_ProtCryo2D/tmp/input_particles.star", "particle_blob_path": "/mnt/data1/mauricio/cyclo-pasteur/scipion/Cyclodextrine/Runs/002524_ProtCryo2D/tmp", "psize_A": "0.86"}, {}, "False", 0)' failed --> Exit code 1, message Traceback (most recent call last): 00019: File "/home/impmc/cryosparc_new/cryosparc_master/deps/anaconda/envs/cryosparc_master_env/lib/python3.7/runpy.py", line 193, in _run_module_as_main 00020: "__main__", mod_spec) 00021: File "/home/impmc/cryosparc_new/cryosparc_master/deps/anaconda/envs/cryosparc_master_env/lib/python3.7/runpy.py", line 85, in _run_code 00022: exec(code, run_globals) 00023: File "/home/impmc/cryosparc_new/cryosparc_master/cryosparc_compute/client.py", line 91, in <module> 00024: print(eval("cli."+command)) 00025: File "<string>", line 1, in <module> 00026: File "/home/impmc/cryosparc_new/cryosparc_master/cryosparc_compute/client.py", line 64, in func 00027: assert False, res['error'] 00028: AssertionError: {'code': 500, 'data': None, 'message': "OtherError: argument of type 'NoneType' is not iterable", 'name': 'OtherError'} 00029: Protocol failed: /home/impmc/cryosparc_new/cryosparc_master/bin/cryosparcm cli 'make_job("import_particles","P3","W2", "", "None", "None", {"particle_meta_path": "/mnt/data1/mauricio/cyclo-pasteur/scipion/Cyclodextrine/Runs/002524_ProtCryo2D/tmp/input_particles.star", "particle_blob_path": "/mnt/data1/mauricio/cyclo-pasteur/scipion/Cyclodextrine/Runs/002524_ProtCryo2D/tmp", "psize_A": "0.86"}, {}, "False", 0)' failed --> Exit code 1, message Traceback (most recent call last): 00030: File "/home/impmc/cryosparc_new/cryosparc_master/deps/anaconda/envs/cryosparc_master_env/lib/python3.7/runpy.py", line 193, in _run_module_as_main 00031: "__main__", mod_spec) 00032: File "/home/impmc/cryosparc_new/cryosparc_master/deps/anaconda/envs/cryosparc_master_env/lib/python3.7/runpy.py", line 85, in _run_code 00033: exec(code, run_globals) 00034: File "/home/impmc/cryosparc_new/cryosparc_master/cryosparc_compute/client.py", line 91, in <module> 00035: print(eval("cli."+command)) 00036: File "<string>", line 1, in <module> 00037: File "/home/impmc/cryosparc_new/cryosparc_master/cryosparc_compute/client.py", line 64, in func 00038: assert False, res['error'] 00039: AssertionError: {'code': 500, 'data': None, 'message': "OtherError: argument of type 'NoneType' is not iterable", 'name': 'OtherError'} |