[scipion-users] Scipion + Centos 8

[Marc H. L. <mh...@ib...>]

Hi guys!

I hope someone can help me, I have the Centos8 version, and I'm standing at
this point with conda:

   - python -m scipion installp -p scipion-em-xmipp -j 12

and the error output is:

...
* mpirun or mpiexec have failed.*
* Cannot compile with MPI or use it*
* rm xmipp_mpi_test_main**
*rm: cannot remove 'xmipp_mpi_test_main*': No such file or directory*

*Check failed! Something wrong with the configuration.*


*Traceback (most recent call last):*
*  File
"/cryoem-apps/miniconda/envs/scipion3/lib/python3.8/site-packages/scipion/__main__.py",
line 470, in <module>*
*    main()*
*  File
"/cryoem-apps/miniconda/envs/scipion3/lib/python3.8/site-packages/scipion/__main__.py",
line 293, in main*
*    installPluginMethods()*
*  File
"/cryoem-apps/miniconda/envs/scipion3/lib/python3.8/site-packages/scipion/install/install_plugin.py",
line 232, in installPluginMethods*
*    plugin.installBin({'args': ['-j', numberProcessor]})*
*  File
"/cryoem-apps/miniconda/envs/scipion3/lib/python3.8/site-packages/scipion/install/plugin_funcs.py",
line 166, in installBin*
*    environment.execute()*
*  File
"/cryoem-apps/miniconda/envs/scipion3/lib/python3.8/site-packages/scipion/install/funcs.py",
line 748, in execute*
*    self._executeTargets(targetList)*
*  File
"/cryoem-apps/miniconda/envs/scipion3/lib/python3.8/site-packages/scipion/install/funcs.py",
line 690, in _executeTargets*
*    tgt.execute()*
*  File
"/cryoem-apps/miniconda/envs/scipion3/lib/python3.8/site-packages/scipion/install/funcs.py",
line 221, in execute*
*    command.execute()*
*  File
"/cryoem-apps/miniconda/envs/scipion3/lib/python3.8/site-packages/scipion/install/funcs.py",
line 161, in execute*
*    assert glob(t), ("target '%s' not built (after "*
*AssertionError: target
'/cryoem-apps/scipion/scipion3.0/software/em/xmipp/bin/xmipp_reconstruct_significant'
not built (after running 'cd . && ./xmipp config noAsk && ./xmipp
check_config && ./xmipp compileAndInstall N=12 && ln -srfn build
/cryoem-apps/scipion/scipion3.0/software/em/xmipp && cd - && touch
installation_finished && rm bindings_linked 2> /dev/null')*
*Error at main: target
'/cryoem-apps/scipion/scipion3.0/software/em/xmipp/bin/xmipp_reconstruct_significant'
not built (after running 'cd . && ./xmipp config noAsk && ./xmipp
check_config && ./xmipp compileAndInstall N=12 && ln -srfn build
/cryoem-apps/scipion/scipion3.0/software/em/xmipp && cd - && touch
installation_finished && rm bindings_linked 2> /dev/null')*


Thanks and regards
-- 

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Marcos H.Lee

IBMB-CSIC

E-mail: mh...@ib...