[scipion-users] [Troubleshooting request] Error opening scipion3 after topaz installation

[#CHEW B. L. A. <CHEW0357@e.ntu.edu.sg>]

Dear Scipion community,

I had no issues using scipion3 until I have installed topaz under the installation instructions listed in cryosparc https://guide.cryosparc.com/processing-data/all-job-types-in-cryosparc/deep-picking/topaz
I have tried reading through the troubleshooting guide but could not seem to find a solution to my problem here.
I have attached various screenshots that show the path pointed out by "scipion3" command points to topaz, but this is not the case in my bashrc setting. Screenshots *_1 and *_2 are the list of documents in the Programme and anaconda env.
I could not seem to find the scipion.conf file as well, I am unsure if setting the scipion.conf is the fix I need in my case or simply reinstall scipion3 by following the installation guide again?


Thank you and hope to receive any useful advice on how to proceed.

Best Regards

Alvin CHEW | Ph.D. Student |  Nanyang Technological University |<http://www.lkcmedicine.ntu.edu.sg/>

"(You) who (have) a why to live can bear almost any how."
~Friedrich Nietzsche<http://www.brainyquote.com/quotes/quotes/f/friedrichn103819.html>~