Re: [scipion-users] Relion 3D classification error

[Anastasina, M. <mar...@he...>]

Dear Grigory,

Here they go

Best,
Maria

[masha@puhti-login2 ~]$ scipion3 config -p relion
Scipion v3.0.8 - Eugenius
Variables defined by plugin 'relion':

RELION_HOME = /appl/soft/math/scipion/3.0.7/software/em/relion-3.1.1
RELION_CUDA_LIB = /appl/spack/install-tree/gcc-8.3.0/cuda-10.1.168-mrdepn/lib64

These variables can be added/edited in '/appl/soft/math/scipion/3.0.7/config/scipion.conf'


On 29. Sep 2021, at 18.28, Grigory Sharov <sha...@gm...<mailto:sha...@gm...>> wrote:

Dear Maria,

could you please

1) post here the output of "scipion3 config -p relion"
2) attach run.stdout and run.stderr files from the failed protocol

Thank you.

Best regards,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.

MRC Laboratory of Molecular Biology,
Francis Crick Avenue,
Cambridge Biomedical Campus,
Cambridge CB2 0QH, UK.
tel. +44 (0) 1223 267228
e-mail: gs...@mr...<mailto:gs...@mr...>


On Wed, Sep 29, 2021 at 4:08 PM Anastasina, Maria <mar...@he...<mailto:mar...@he...>> wrote:
>
> Hello,
>
> All my recent Relion 3D classification jobs the I run in Scipion fail at CreateOutput step  with the error message "Protocol failed: 'Class3D' object has no attribute ‘_rlnClassDistribution’”.
>
> Jobs that I ran earlier (e.g. 10 days ago) in identical conditions used to finish successfully. I’m not aware of any changes or updates that have been done at our HPC server or Scipion installation (we use Scipion 3.0.8).
>
> Do you know what could be the reason for this error?
>
> Best regards,
> Maria
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