Re: [scipion-users] Relion re-group particles

[Genís V. G. <gen...@ki...>]

Hi Grigory

Many thanks, worked like a charm!

Genis


Genis Valentin Gese | Postdoctoral researcher

Martin Hällberg group
Cell and Molecular Biology Department | Karolinska Institutet
171 65 Stockholm | Solnavägen 9
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________________________________
Från: Grigory Sharov <sha...@gm...>
Skickat: den 21 september 2021 14:52
Till: Mailing list for Scipion users <sci...@li...>
Ämne: Re: [scipion-users] Relion re-group particles

Hi Genis,

Sure, you can do this on the CTF tab of a relion protocol as shown below. Only grouping by defocus is implemented.
[Screenshot_20210921_135024.png]

Best regards,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.

MRC Laboratory of Molecular Biology,
Francis Crick Avenue,
Cambridge Biomedical Campus,
Cambridge CB2 0QH, UK.
tel. +44 (0) 1223 267228<tel:+44%201223%20267228>
e-mail: gs...@mr...<mailto:gs...@mr...>


On Mon, Sep 20, 2021 at 10:23 PM Genís Valentín Gesé <gen...@ki...<mailto:gen...@ki...>> wrote:
Hi everyone!

When running relion jobs, I get many warnings similar to this one:
WARNING: There are only 3 particles in group 6 of half-set 1

In the relion GUI this can be fixed by re-grouping particles from the "Select" job. Is there a way to regroup particles within Scipion?

Thanks and best regards!



Genis Valentin Gese | Postdoctoral researcher

Martin Hällberg group
Cell and Molecular Biology Department | Karolinska Institutet
171 65 Stockholm | Solnavägen 9
gen...@ki...<mailto:fir...@ki...> | ki.se<https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fki.se%2Fen%2Fstartpage&data=04%7C01%7Cgenis.valentin.gese%40ki.se%7Cacec253d3b304ac78e2708d97cfee86e%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637678256537755293%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=1PecBCrYzaMlLmbo2TaLi5VM4v%2Fo1VP9P2%2Bkzhp3jOM%3D&reserved=0>




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