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[scipion-users] Antw: Antw: Re: Antw: Re: Antw: Antw: Re: Antw: Re: Antw: Re: SCIPION installation error -- xmipp: Something went wrong (SEE ERRORS ABOVE) when running:
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From: Christian T. <chr...@bi...> - 2021-05-21 06:48:33
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Hi all,
this is just summarizing our issue and the solution. We had some
problems during installation. The scipion3 core was installed, but xmipp
failed. There were two different issues. If you observe the same, here
is our solution:
First Issue: 'libfftw3' not found in the system. Installation using
conda automatically during installation failed.
Solution: Installed libtiff systemwide with: yum install libtiff*
Second issue: /usr/bin/ld: warning: libwebp.so.7, needed by
/home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so, not
found (try using -rpath or -rpath-link)
The library libwebp.so.7 was not found, even though present in the
<condapath>/envs/scipion3/lib folder.
Solution: export the library path of the enviroment to LD_LIBRARY_PATH
with: export
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/path/to/conda/envs/scipion3/lib/
With this, we were able to compile xmipp.
To add the path not always to the path but only when scipion3 is
executed, I add a little function instead of a alias to start scipion3
in ~/.bashrc:
# scipion3
scipion3() {
export
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/user/Data/Software/miniconda/envs/scipion3/lib/
/home/user/Data/Software/scipion3/scipion3 "$@"
}
With this function, the envs/lib path is added first and then scipion is
started with all args given to the function.
Thanks @Grigory for all the support.
Best
Christian
>>> Christian Tüting <chr...@bi...>
20.05.21 22.48 Uhr >>>
Hi Jose Miguel,
it looks like adding the scipion3 env library path to LD_LIBRARY_PATH
did the job. xmipp was compiled and installed successfully and the first
test were also running fine (preprocess micrographs and particle
picking). We setting up our workflow with all plugins and test tomorrow
again. But if no furher error occur, I will anser on this mailing thread
with a summarizing mail, describing the inital issue and our solution,
so if other have the same issue, they dont need to go through all mails.
Best
Christian
>>> Jose Miguel de la Rosa Trevin <del...@gm...> 20.05.21
22.40 Uhr >>>
Hi Christian,
I have a repository with an alternative Scipion installation script and
with pre-compiled Xmipp binaries.
Let me know if you want to give it a try.
Best,
Jose Miguel
On Thu, May 20, 2021 at 8:59 PM Christian Tüting <
chr...@bi...> wrote:
> Ok. We will test this and keep you informed.
>
> >>> Grigory Sharov <sha...@gm...> 20.05.21 20.56 Uhr >>>
> If you were able to successfully build xmipp, you need to check if you
> can
> display images in scipion to make sure it works.
>
> Best regards,
> Grigory
>
>
>
--------------------------------------------------------------------------------
> Grigory Sharov, Ph.D.
>
> MRC Laboratory of Molecular Biology,
> Francis Crick Avenue,
> Cambridge Biomedical Campus,
> Cambridge CB2 0QH, UK.
> tel. +44 (0) 1223 267228 <+44%201223%20267228>
> e-mail: gs...@mr...
>
>
> On Thu, May 20, 2021 at 7:54 PM Christian Tüting <
> chr...@bi...> wrote:
>
> > I (temporarily) fixed the error with:
> >
> > export
> >
> >
>
>
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/user/Data/Software/miniconda/envs/scipion3/lib/
> >
> >
> > xmipp is currently compiling. I am really no expert in server
> > maintainance, so I am not sure what are the implications of this.
> Afaik,
> > this is only a fix for the current shell, so after reboot, this fix
> > should be gone. So if xmipp needs this library, I guess I have to
add
> > this export command to ~/.bashrc, right?
> >
> > Best
> >
> > Christian
> >
> >
> > >>> Christian Tüting <chr...@bi...>
> > 20.05.21 20.20 Uhr >>>
> > Hi,
> >
> > I tried yum install libtiff libtiff-devel before, but yum says,
> "nothing
> > to do". But, yum install libtiff* helped to install the missing
> packages
> > somehow.
> >
> > So the error disappers from ./xmipp_c> >
> > But ./xmipp check_config still fails.
> >
> > (scipion3) [user@dataanalysisserver1 xmippSrc-v3.20.07]$ ./xmipp
> config
> > Configuring -----------------------------------------
> > gcc detected
> > g++ -c -w -mtune=native -march=native -std=c++11 -O3
> > xmipp_test_opencv.cpp -o xmipp_test_opencv.o -I../
> > -I/home/user/Data/Software/miniconda/envs/scipion3/include
> > OpenCV not found
> > rm -v xmipp_test_opencv*
> > 'mpirun' and 'mpiexec' not found in the PATH
> > Alternative found at '/usr/lib64/openmpi/bin'.
> > Please, press [return] to use it or type a path where to locate it:
> > -> /usr/lib64/openmpi/bin
> > 'mpicc' not found in the PATH
> > Alternative found at '/usr/lib64/openmpi/bin'.
> > Please, press [return] to use it or type a path where to locate it:
> > -> /usr/lib64/openmpi/bin
> > 'mpicxx' not found in the PATH
> > Alternative found at '/usr/lib64/openmpi/bin'.
> > Please, press [return] to use it or type a path where to locate it:
> > -> /usr/lib64/openmpi/bin
> > Java detected at: /home/user/Data/Software/miniconda/envs/scipion3
> > 'nvcc' not found in the PATH (either in CUDA_BIN/XMIPP_CUDA_BIN)
> > Alternative found at '/usr/local/cuda/bin'.
> > Please, press [return] to use it or type a path where to locate it:
> > -> /usr/local/cuda/bin
> > CUDA-10.1.243 detected.
> > CUDA-8.0 is recommended.
> > Using '> > (scipion3) [user@dataanalysisserver1 xmippSrc-v3.20.07]$
./xmipp
> > check_config
> > Checking configuration ------------------------------
> > Checking compiler configuration ...
> > g++ 4.8.5 detected
> > g++ -c -w -mtune=native -march=native -std=c++11 -O3
> xmipp_test_main.cpp
> > -o xmipp_test_main.o -I../
> > -I/home/user/Data/Software/miniconda/envs/scipion3/include
> > -I/home/user/Data/Software/miniconda/envs/scipion3/include/python3.8
> >
> >
>
>
-I/home/user/Data/Software/miniconda/envs/scipion3/lib/python3.8/site-packages/numpy/core/include
> > g++ -L/home/user/Data/Software/miniconda/envs/scipion3/lib
> > xmipp_test_main.o -o xmipp_test_main -lfftw3 -lfftw3_threads -lhdf5
> > -lhdf5_cpp -ltiff -ljpeg -lsqlite3 -lpthread
> > /usr/bin/ld: warning: libwebp.so.7, needed by
> > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so, not
> > found (try using -rpath or -rpath-link)
> > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > undefined reference to `WebPPictureImportRGB'
> > /home/user/Data/Software/>
> /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > undefined reference to `WebPPictureFree'
> > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > undefined reference to `WebPIAppend'
> > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > undefined reference to `WebPIDecGetRGB'
> > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > undefined reference to `WebPINewDecoder'
> > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > undefined reference to `WebPPictureImportRGBA'
> > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > undefined reference to `WebPConfigInitInternal'
> > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > undefined reference to `WebPEncoundefined reference to
> `WebPValidateConfig'
> > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > undefined reference to `WebPPictureInitInternal'
> > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > undefined reference to `WebPFreeDecBuffer'
> > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > undefined reference to `WebPIDelete'
> > collect2: error: ld returned 1 exit status
> > Check the LINKERFORPROGRAMS, LINKFLAGS and LIBDIRFLAGS
> > Cannot compile
> > Possible solutiolibhdf5-dev libopencv-dev python3-dev python3-numpy
> > python3-scipy
> > python3-mpi4py
> > In Manjaro: sudo pacman -Syu install hdf5 python3-numpy
python3-scipy
> > --noconfirm
> > Please, see
> > '
> >
>
>
https://scipion-em.github.io/docs> > for more information about libraries dependencies.
> > Remember to re-run './xmipp config' after installing libraries in
> order
> > to take into account the new system configuration.
> > rm xmipp_test_main*
> > Check failed! Something wrong with the configuration.
> >
> >
> > It's still looking for libwebp.so.7, but this is present:
> >
> > (scipion3) [user@dataanalysisserver1 xmippSrc-v3.20.07]$ ls -ltr
> > ../../../../miniconda/envs/scipion3/lib/libwebp.so*
> > -rwxrwxrwx. 2 user user 598608 Feb 1 16:15
> > ../../../../miniconda/envs/scipion3/lib/libwebp.so.7.1.1
> > lrwxrwxrwx. 1 user user
> > 16 May 20 10:07 ../../../../miniconda/envs/scipion3/lib/libwebp.so.7
> ->
> > libwebp.so.7.1.1
> > lrwxrwxrwx. 1 user user
> > 16 May 20 10:07 ../../../../miniconda/envs/scipion3/lib/libwebp.so
->
> > libwebp.so.7.1.1
> >
> > Best
> >
> > Christian
> >
> >
> > >>> Grigory Sharov <sha...@gm...> 20.05.21 19.54 Uhr >>>
> > Hi Christian,
> >
> > I guess xmipp script still cannot recognize libtiff that it has
> > installed.
> > I can reproduce your problem on my machine. But I have a system
> library
> > installed.
> >
> > So, the easiest solution is to install libtiff / libtiff-devel
using
> > your
> > package manager (yum)
> >
> > Best regards,
> >> > Grigory Sharov, Ph.D.
> >
> > MRC Laboratory of Molecular Biology,
> > Francis Crick Avenue,
> > Cambridge Biomedical Campus,
> > Cambridge CB2 0QH, UK.
> > tel. +44 (0) 1223 267228 <+44%201223%20267228>
> > e-mail: gs...@mr...
> >
> >
> > On Thu, May 20, 2021 at 6:34 PM Christian Tüting <
> > chr...@bi...> wrote:
> >
> > > Hi,
> > >
> > > it fails with similar errors like in the automatic installation:
> > >
> > >
> > > (scipion3) [user@dataanalysisserver1 scipion3]$ ldd
> > > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so
> > > linux-vdso.so.1 => (0x00007ffe872c3000)
> > > libwebp.so.7 =>
> > >
/home/user/Data/Software/miniconda/envs/scipion3/lib/./libwebp.so.7
> > > (0x00007f8f7253a000)
> > > libzstd.so.1 =>
> > >
/home/user/Data/Software/miniconda/envs/scipion3/lib/./libzstd.so.1
> > > (0x00007f8f7246e000)
> > > liblzma.so.5 =>
> > >
/home/user/Data/Software/miniconda/envs/scipion3/lib/./liblzma.so.5
> > > (0x00007f8f723fe000)
> > > libjpeg.so.9 =>
> > >
/home/user/Data/Software/miniconda/envs/scipion3/lib/./libjpeg.so.9
> > > (0x00007f8f721c2000)
> > > libz.so.1 =>
> > > /home/user/Data/Softw> > libm.so.6 => /lib64/libm.so.6
> (0x00007f8f71ea4000)
> > > libc.so.6 => /lib64/libc.so.6 (0x00007f8f71ad6000)
> > > libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f8f718ba000)
> > > librt.so.1 => /lib64/librt.so.1 (0x00007f8f716b2000)
> > > /lib64/ld-linux-x86-64.so.2 (0x00007f8f72427000)
> > >
> > > (scipion3) [user@dataanalysisserver1 xmippSrc-v3.20.07]$ ./xmipp
> > config
> > > Configuring -----------------------------------------
> > > gcc detected
> > > 'libtiff' not found in the system
> > > 'libtiff' dependency not found. Do you want to install it using
> conda?
> > > [YES/no] Y
> > > Trying to install libtiff with conda
> > > conda activate scipion3 ; conda install libtiff -y -c defaults
> > > CommandNotFoundError: Your shell has not been properly configured
to
> > use
> > > 'conda activate'.
> > > To initialize your shell, run
> > > $ conda init <SHELL_NAME>
> > > Currently supported shells are:
> > > - bash
> > > - fish
> > > - tcsh
> > > - x> IMPORTANT: You may need to close and restart your shell after
> > running
> > > 'conda init'.
> > > Collecting package metadata (current_repodata.json): ...working...
> > done
> > > Solving environment: ...working... done
> > > # All requested packages already installed.
> > > 'libtiff' installed in conda environ 'scipion3'.
> > > g++ -c -w -mtune=native -march=native -std=c++11 -O3
> > > xmipp_test_opencv.cpp -o xmipp_test_opencv.o -I..> 'mpirun' and
> > 'mpiexec' not found in the PATH
> > > Alternative found at '/usr/lib64/openmpi/bi> > > 'mpicc' not found in the PATH
> > > Alternative found at '/usr/lib64/openmpi/bin'.
> > > Please, press [return] to use it or type a path where to locate
it:
> > > -> /usr/lib64/openmpi/bin
> > > 'mpicxx' not found in the PATH
> > > Alternative found at '/usr/lib64/openmpi/bin'.
> > > Please, press [return] to use it or type a path where to locate
it:
> > > -> /usr/lib64/openmpi/bin
> > > Java detected at: /home/user/Data/Software/miniconda/envs/scipion3
> > > 'nvcc' not found in the PATH (either in CUDA_BIN/XMIPP_CUDA_BIN)
> > > Alternative found at '/usr/local/cuda/bin'.
> > > Please, press [return] to use it or type a path where to locate
it:
> > > -> /usr/local/cuda/bin
> > > CUDA-10.1.243 detected.
> > > CUDA-8.0 is recommended.
> > > Using '/usr/local/cuda-10.1/targets/x86_64-linux/lib'.
> > > Configuration completed.....
> > > (scipion3) [user@dataanalysisserver1 xmippSrc-v3.20.07]$ ./xmipp
> > config
> > > Configuring -----------------------------------------
> > > gcc detected
> > > 'libtiff' not found in the system
> > > 'libtiff' dependency not found. Do you want to install it using
> conda?
> > > [YES/no]
> > > Trying to install libtiff with conda
> > > conda activate scipi> > > CommandNotFoundError: Your shell has not
been properly configured
to
> > use
> > > 'conda activate'.
> > > To initialize your shell, run
> > > $ conda init <SHELL_NAME>
> > > Currently supported shells are:
> > > - bash
> > > - fish
> > > - tcsh
> > > - xonsh
> > > - zsh
> > > - powershell
> > > See 'conda init --help' for more information and options.
> > > IMPORTANT: You may need to close and restart your shell after
> running
> > > 'conda init'.
> > > Collecting package metadata (current_repodata.json): ...working...
> > done
> > > Solving environment: ...working... done
> > > # All requested packages already installed.
> > > 'libtiff' installed in conda exmipp_test_opencv.cpp -o
> > xmipp_test_opencv.o
> > > -I../
> > > -I/home/user/Data/Software/miniconda/envs/scipion3/include
> > > OpenCV not found
> > > rm -v xmipp_test_opencv*
> > > 'mpirun' and 'mpiexec' not found in the PATH
> > > Alternative found at '/usr/lib64/openmpi/bin'.
> > > Please, press [return] to use it or type a path where to locate
it:
> > > -> /usr/lib64/openmpi/bin
> > > 'mpicc' not found in the PATH
> > > Alternative found at '/usr/lib64/openmpi/bin'.
> > > Please, press [return] to use it or type a path where to locate
it:
> > > -> /usr/lib64/openmpi/bin
> > > 'mpicxx' not found in the PATH
> > > Alternative found at '/usr/lib64/openmpi/bin'.
> > > Please, press [return> > Java detected at:
> /home/user/Data/Software/miniconda/envs/scipion3
> > > 'nvcc' not found in the PATH (either in CUDA_BIN/XMIPP_CUDA_BIN)
> > > Alternative found at '/usr/local/cuda/bin'.
> > > Please, press [return] to use it or type a path where to locate
it:
> > > -> /usr/local/cuda/bin
> > > CUDA-10.1.243 detected.
> > > CUDA-8.0 is recommended.
> > > Using '/usr/local/cuda-10.1/targets/x86_64-linux/lib'.
> > > Configuration completed.....
> > >
> > > (scipion3) [user@dataanalysisserver1 xmippSrc-v3.20.07]$ ./xmipp
> > > check_config
> > > Checking configuration ------------------------------
> > > Checking compiler configuration ...
> > > g++ 4.8.5 detected
> > > g++ -c -w -mtune=native -march=native -std=c++11 -O3
> > xmipp_test_main.cpp
> > > -o xmipp_test_main.o -I../
> > > -I/home/user/Data/Software/miniconda/envs/scipion3/include
> > >
-I/home/user/Data/Software/miniconda/envs/scipion3/include/python3.8
> > >
> > >
> >
>
>
-I/home/user/Data/Software/miniconda/envs/scipion3/lib/python3.8/site-packages/numpy/c>
> > xmipp_test_main.o -o xmipp_test_main -lfftw3 -lfftw3_threads -lhdf5
> > > -lhdf5_cpp -ltiff -ljpeg -lsqlite3 -lpthread
> > > /usr/bin/ld: warning: libwebp.so.7, needed by
> > > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so,
not
> > > found (try using -rpath or -rpath-link)
> > > /home/user/Data/Software/miniconda/envs/scipion3/lib/lib>
> >> > > undefined reference to `WebPInitDecBufferInternal'
> > > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > > undefined reference to `WebPPictureFree'
> > > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > > undefined reference to `WebPIAppend'
> > > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > > undefined reference to `WebPIDecGetRGB'
> > > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > > undefined reference to `WebPINewDecoder'
> > > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > > undefined reference to `WebPPictureImportRGBA'
> > > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > > undefined reference to `WebPConfigInitInternal'
> > > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > > undefined reference to `WebPEncode'
> > > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > > undefined reference to `WebPValidateConfig'
> > > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > > undefined reference to `WebPPictureInitInternal'
> > > /home/user/Dat> > > undefined reference to `WebPFreeDecBuffer'
> > > /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so:
> > > undefined reference to `WebPIDelete'
> > > collect2: error: ld returned 1 exit status
> > > Check the LINKERFORPROGRAMS, LINKFLAGS and LIBDIRFLAGS
> > > Cannot compile
> > > Possible solutions
> > > In Ubuntu: sudo apt-get -y install libsqlite3-dev libfftw3-dev
> > > libhdf5-dev libopencv-dev python3-dev python3-numpy python3-scipy
> > > python3-mpi4py
> > > In Manjaro: sudo pacman -Syu install hdf5 python3-numpy
> python3-scipy
> > > --noconfirm
> > > Please, see
> > > '
> > >
> >
> >
>
>
https://scipion-em.github.io/docs/docs/scipion-modes/install-from-sources.html#step-2-dependencies
> > > '
> > > for more information about libraries dependencies.
> > > Remember to re-run './xmipp config' after installing libraries in
> > order
> > > to take into account the new system configuration.
> > > rm xmipp_test_main*
> > > Check failed! Trying to install libtiff with conda
> > > conda activate scipion3 ; conda install libtiff -y -c defaults
> > > CommandNotFoundError: Your shell has not been properly configured
to
> > use
> > > 'conda activate'.
> > >
> > > Because I can run it manually without errors:
> > >
> > > (scipion3) [user@dataanalysisserver1 xmippSrc-v3.20.07]$ conda
> > activate
> > > scipion3 ; conda install libtiff -y -c defaults
> > > Collecting package metadata (current_repodata.json): done
> > > Solving environment: done
> > > # All requested packages alre> > And also, thanks already in
advance.
> I really appreciate your help.
> > >
> > > Best Christian
> > >
> > >
> > >
> > > >>> Grigory Sharov <sha...@gm...> 20.05.21 18.12 Uhr
>>>
> > > Hi,
> > >
> > > Let's try manual installation:
> > >
> > > conda activate scipion3
> > > > ldd
> /home/user/Data/Software/miniconda/envs/scipion3/lib/libtiff.so
> > ->
> > > > check output for errors
> > > > export SCIPION_HOME="/home/user/Data/Software/scipion3/"
> > > > cd
/home/user/Data/Software/scipion3/software/em/xmippSrc-v3.20.07
> > > > ./xmipp config -> check if all is correct in xmipp.conf
> > > > ./xmipp check_config -> check for errors
> > > > ./xmipp compileAndInstall N=4 && ln -srfn build
> > > > /home/user/Data/Software/scipion3/software/em/xmipp && cd - &&
> touch
> > > > installation_finished && rm bindings_linked 2> /dev/null
> > >
> > >
> > > You can post output errors from these commands here.
> > >
> > > Best regards,
> > > Grigory
> > >
> > >
> > >
> >
> >
>
>
--------------------------------------------------------------------------------
> > > Grigory Sharov, Ph.D.
> > >
> > > MRC Laboratory of Molecular Biology,
> > > Francis Crick Avenue,
> > > Cambridge Biomedical Campus,
> > > Cambridge CB2 0QH, UK.
> > > tel. +44 (0) 1223 267228 <+44%201223%20267228>
> > > e-mail: gsharov@mrc-lmb.>
> chr...@bi...>
> > > > yes we have the library in the scipion3 env:
> > > >
> > > >
> > > > [user@dataanalysisserver1 lib]$ ls -d $PWD/libwebp.so.7
> > > >
> > > >
> > > > /home/user/Data/Software> > [92m conda activate scipion3 ; conda
> > install fftw -y -c defaults[0m
> > > > CommandNotFoundError: Your shell has not been properly
configured
> to
> > > use
> > > > 'conda activate'.
> > > >
> > > > When I am coping this command, it runs without any issue.
> > > >
> > > >
> > > > Thanks for your help.
> > > >
> > > > best
> > > > Christian
> > > >
> > > >
> > > >
> > > > >>> Grigory Sharov <sha...@gm...> 20.05.21 16.39 Uhr
> >>>
> > > > Hi,
> > > >
> > > > do you have libwebp.so.7 in
> > > > /home/user/Data/Software/miniconda/envs/scipion3/lib/ ?
> > > >
> > > > Best regards,
> > > > Grigory
> > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
--------------------------------------------------------------------------------
> > > > Grigory Sharov, Ph.D.
> > > >
> > > > MRC Laboratory of Molecular Biology,
> > > > Francis Cri> > > > e-mail: gs...@mr...
> > > >
> > > >
> > > > On Thu, May 20, 2021 at 3:00 PM Dmitry Semchonok
> > <Sem...@gm...>
> > > > wrote:
> > > >
> > > > > Dear colleagues,
> > > > >
> > > > > We reinstalled the centos 7 on our server as well as
miniconda.
> > > > >
> > > > >
> > > > >
> > > > > The core was installed correctly but during xmipp installation
> > some
> > > error
> > > > > appeared. Please have a look on the file attached.
> > > > >
> > > > >
> > > > >
> > > > > Could you please advice how to proceed?
> > > > >
> > > > >
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > Thank you in advance.
> > > > >
> > > > >
> > > > > Sincerely,
> > > > > Dmitry and
> > Christian_______________________________________________
> > > > > scipion-users mailing list
> > > > > sci...@li...
> > > > > https://lists.sourceforge.net/lists/listinfo/scipion-users
> > > > >
> > > >
> > > >
> > > >
> > > > _______________________________________________
> > > > scipion-users mailing list
> > > > sci...@li...
> > > > https://lists.sourceforge.net/lists/listinfo/scipion-users
> > > >
> > >
> > >
> > >
> > > _______________________________________________
> > > scipion-users mailing list
> > > sci...@li...
> > > https://lists.sourceforge.net/lists/listinfo/scipion-users
> > >
> >
> >
> >
> > _______________________________________________
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> > sci...@li...
> > https://lists.sourceforge.net/lists/listinfo/scipion-users
> >
> >
> > _______________________________________________
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> > https://lists.sourceforge.net/lists/listinfo/sci
>
>
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