Re: [scipion-users] Extending the functionality of cryosparc2 – 3D Helical Refinement (BETA)

[Dmitry S. <Sem...@gm...>]

Dear Yunior,

Thank you very much for taking the actions to improve SCIPION.

I am very grateful!

Sincerely,
Dmitry


> On 4. May 2021, at 10:05, Yunior C. Fonseca Reyna <su...@bc...> wrote:
> 
> Hi Dmitry,
> 
> You're right, that job can run without inputting a reference volume. The job can generate an initial volume. I have already extended that functionality but for some reason CS fails. Maybe it's my particles or the amount I'm using. I will try other sets to reach some conclusion. I'll write to you when I release the changes.
> 
> ​Best Regards,
> Yunior
> 
> 
> Activo Vie, 30 Abr a 10:04 AM , Mailing list for Scipion users <sci...@li...> Escrito:
>  <>Dear Yunior,
>  
> Small question –
> Is it possible to add to the existing cryosparc2 – 3D Helical Refinement (BETA) protocol the function to run the unsupervised helix reconstruction with our input volume --- “when the helical refinement job also doesn't require an input volume”?
>  
> As it described here https://guide.cryosparc.com/processing-data/all-job-types-in-cryosparc/helical-reconstruction-beta/case-study-empiar-10031-mavs <https://guide.cryosparc.com/processing-data/all-job-types-in-cryosparc/helical-reconstruction-beta/case-study-empiar-10031-mavs> in the chapter Helical Refinement — Asymmetric Helical Refinement
>  
> Thank you
>  
> Sincerely,
> Dmitry
>  
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