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Re: [scipion-users] Particle extraction from the other software packages
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From: Dmitry S. <Sem...@gm...> - 2021-04-28 09:32:09
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Dear Pablo, I am not sure how to get the stack, containing my particles out from (standing alone) - Relion - Cryosparc So I am 1 step behind import. Or do you mean I can in SCIPION select — import averages and then as an input specify the 2D classification file from relion // or cryosparc? Thank you! Sincerely, Dmitry > On 28. Apr 2021, at 10:22, Pablo Conesa <pc...@cn...> wrote: > > Hi Dmitry, have you tried "Import averages" to import the 2d classes stack? > > And then from there you should be able to run any initial model method , except CS one that uses particles instead. > > On 28/4/21 9:59, Dmitry Semchonok wrote: >> Hello Jorge, >> >> Yes, or into SCIPION. >> >> Example: — we started a project in relion. >> We have some nice 2D class averages. >> But the initial modelling for some reason does not work. >> >> So I would like somehow to: >> >> a) extract those particles (mrc // stk), >> b) import them to SCIPION. >> c) run initial modelling in SCIPION. >> d) Export this initial model to relion and proceed. >> >> >> >> >> >> Thank you >> >> >> Sincerely, >> Dmitry >> >> >> >> >>> On 28. Apr 2021, at 09:39, Jorge Jimenez <su...@bc... <mailto:su...@bc...>> wrote: >>> >>> Hi Dmitry, >>> Do you mean moving from Relion or Cryosparc from outside of Scipion to process their results inside Scipion? >>> Best, >>> Scipion Team >>> >>> Ticket: https://bcucnb.freshdesk.com/helpdesk/tickets/921 <https://bcucnb.freshdesk.com/helpdesk/tickets/921> >>> >>> Activo Lun, 26 Abr a 9:39 AM , Mailing list for Scipion users <sci...@li... <mailto:sci...@li...>> Escrito: >>> Dear colleagues, >>> >>> Small question – >>> >>> Do you know how to extract particles from relion & cryosparc to run them in SCIPION? >>> >>> Thank you! >>> >>> Sincerely, >>> Dmitry >>> Biocomputing unit - National Center for Biotechnology powered by Freshdesk <https://freshdesk.com/freshdesk-demo?utm_source=emailfooter&referrer=bcucnb.freshdesk.com> 921:553135 >>> _______________________________________________ >>> scipion-users mailing list >>> sci...@li... <mailto:sci...@li...> >>> https://lists.sourceforge.net/lists/listinfo/scipion-users <https://lists.sourceforge.net/lists/listinfo/scipion-users> >> >> >> >> >> _______________________________________________ >> scipion-users mailing list >> sci...@li... <mailto:sci...@li...> >> https://lists.sourceforge.net/lists/listinfo/scipion-users <https://lists.sourceforge.net/lists/listinfo/scipion-users> > -- > Pablo Conesa - Madrid Scipion <http://scipion.i2pc.es/> team > _______________________________________________ > scipion-users mailing list > sci...@li... > https://lists.sourceforge.net/lists/listinfo/scipion-users |
