[scipion-users] DeepLearning toolkit installation issue

[Dmitry S. <Sem...@gm...>]

 <>Dear colleagues,

 

I received an error while trying to install DeepLearning toolkit on our server PC from the commandline

 

 

scipion3 installb deepLearningToolkit

Scipion v3.0.7 - Eugenius

 

 >>> WARNING: Image library not found!

  > Please install Xmipp to get full functionality.

(Configuration->Plugins->scipion-em-xmipp -> expand, in Scipion plugin manager window)

 

 Error retrieving plugin locscale binaries:  'SCIPION_MPI_FLAGS'

Building deepLearningToolkit-0.2 ...

  Skipping command: wget -nv -c -O /home/user/Data/Software/Scipion3/software/em/deepLearningToolkit.tgz.part http://scipion.cnb.csic.es/downloads/scipion/software/external/deepLearningToolkit.tgz

mv -v /home/user/Data/Software/Scipion3/software/em/deepLearningToolkit.tgz.part /home/user/Data/Software/Scipion3/software/em/deepLearningToolkit.tgz

  All targets exist.

  Skipping command: tar -xf deepLearningToolkit.tgz

  All targets exist.

  Skipping command: if ls /home/user/Data/Software/Scipion3/software/em/xmipp/lib/libXmipp.so > /dev/null ; then touch xmippLibToken; echo ' > CUDA support find. Driver version: 460' ; else echo ; echo ' > Xmipp installation not found, please install it first (xmippSrc or xmippBin*).';echo; fi

  All targets exist.

cd /home/user/Data/Software/Scipion3/software/em/deepLearningToolkit

echo "Some error occurred when importing xmipp_base (from Xmipp binding): No module named 'xmipp_base'"

Some error occurred when importing xmipp_base (from Xmipp binding): No module named 'xmipp_base'

Traceback (most recent call last):

  File "/home/user/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/__main__.py", line 457, in <module>

    main()

  File "/home/user/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/__main__.py", line 297, in main

    installPluginMethods()

  File "/home/user/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/install_plugin.py", line 259, in installPluginMethods

    pinfo.installBin({'args': [binTarget, '-j', numberProcessor]})

  File "/home/user/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/plugin_funcs.py", line 166, in installBin

    environment.execute()

  File "/home/user/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/funcs.py", line 748, in execute

    self._executeTargets(targetList)

  File "/home/user/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/funcs.py", line 690, in _executeTargets

    tgt.execute()

  File "/home/user/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/funcs.py", line 221, in execute

    command.execute()

  File "/home/user/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/funcs.py", line 161, in execute

    assert glob(t), ("target '%s' not built (after "

AssertionError: target '/home/user/Data/Software/Scipion3/software/em/deepLearningToolkit/void.target.yml' not built (after running 'echo "Some error occurred when importing xmipp_base (from Xmipp binding): No module named 'xmipp_base'"')

Error at main: target '/home/user/Data/Software/Scipion3/software/em/deepLearningToolkit/void.target.yml' not built (after running 'echo "Some error occurred when importing xmipp_base (from Xmipp binding): No module named 'xmipp_base'"')

 

Any options?

 

Thank you!

 

Sincerely,

Dmitry