Re: [scipion-users] deep microhraph cleaner error

[Pablo C. <pc...@cn...>]

Dear Ana,

This is a bug in xmipp plugin, caused by a recent update of scipion (so 
is more scipion fault). Xmipp team is already testing a fix and soon 
will be released.


As a temporary hack, you can create the missing "tmp" folder at: 
Runs/001218_XmippProtDeepMicrographScreen/*tmp*

**

On 23/2/21 9:17, Ana Andreea ARTENI wrote:
>    Morning,
>
> When using deep micrograph cleaner/analyse results/: when placing the value 0.97 in the program and clicking on the "eye" nothing happens but in the terminal I get the following error:
>
> During handling of the above exception, another exception occurred:
>
> Traceback (most recent call last):
>    File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/tkinter/__init__.py", line 1883, in __call__
>      return self.func(*args)
>    File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/pyworkflow/gui/form.py", line 1281, in _visualizeVar
>      self.visualizeCallback(self.paramName)
>    File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/pyworkflow/viewer.py", line 265, in _visualizeParam
>      views = self._getVisualizeDict()[paramName](paramName)
>    File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/xmipp3/viewers/viewer_deep_micrograph_cleaner.py", line 83, in _visualizeCoordinates
>      newOutput = SetOfCoordinates(filename=coordsViewerFn)
>    File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/pwem/objects/data.py", line 1437, in __init__
>      EMSet.__init__(self, **kwargs)
>    File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/pyworkflow/object.py", line 1096, in __init__
>      self.load()
>    File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/pyworkflow/object.py", line 1196, in load
>      self._mapper = self._MapperClass(fn, self._loadClassesDict(), prefix, self._indexes)
>    File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/pyworkflow/mapper/sqlite.py", line 751, in __init__
>      raise SqliteFlatMapperException('Error creating SqliteFlatMapper, '
> pyworkflow.mapper.sqlite.SqliteFlatMapperException: Error creating SqliteFlatMapper, dbName: Runs/001218_XmippProtDeepMicrographScreen/tmp/coordsViewer.sqlite, tablePrefix:
>   error: unable to open database file
>
> How I can fix this?
> My kind regards,
>                    ana arteni.
>
>
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-- 
Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team*