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Re: [scipion-users] scipion3 workflow and cryosparc plugin problem
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From: Pablo C. <pc...@cn...> - 2021-02-23 11:23:41
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Hi Dmitry, it's in the email I sent. Clearly I do not make myself clear enough or engage you to keep reading!! ;-) Try: *rm /tmp/outdated_cache_scipion-* && **scipion3 update* All the best, Pablo.* * * * "NOTE: It should install scipion-pyworkflow 3.0.10, informing clearly now which protocols are new or in beta: The version checking is cached so if it checked it recently is will not work. To remove the cached files type: rm /tmp/outdated_cache_scipion-* and then scipion3 update." On 23/2/21 11:34, Dmitry Semchonok wrote: > Dear Pablo, > > On the initial step — > > $ scipion update (in our case scipion3 update) > > I have this image > > > How can I get the 3.0.10? > > > Thank you > > Sincerely, > Dmitry > > > > > >> On 23. Feb 2021, at 11:03, Pablo Conesa <pc...@cn... >> <mailto:pc...@cn...>> wrote: >> >> Dear all! >> >> We have fixed this in scipion-pyworkflow package (this is not a >> plugin but a pip pacakge updatable through scipipn3 update). So to >> proceed run: >> >> scipion3 update >> >> You should see something like this-->The package scipion-pyworkflow >> is out of date. Your version is 3.0.9, the latest is 3.0.10. >> >> >> NOTE: It should install scipion-pyworkflow 3.0.10, informing clearly >> now which protocols are new or in beta: >> >> The version checking is cached so if it checked it recently is will >> not work. To remove the cached files type: >> >> rm /tmp/outdated_cache_scipion-* >> >> and then scipion3 update. >> >> NOTE2: What it brings you is a way to identify the development status >> of the protocolos: >> >> <icefhmmbcpapfdio.png> >> >> >> >> On 23/2/21 9:03, Pablo Conesa wrote: >>> >>> Hi, Wolfgang....rest, do not update cryosparc plugin yet. We >>> released a buggy version easy to solve. >>> >>> In the next hour we'll probably fix this. I'll send an email when ready. >>> >>> Apologies! >>> >>> On 22/2/21 13:01, Lugmayr, Wolfgang wrote: >>>> hi, >>>> >>>> i tried to combine scipion and cryosparc today on a local workstation and run into the error message below. >>>> >>>> $ scipion3 last >>>> Scipion v3.0.7 - Eugenius >>>> > error when importing from cryosparc2.protocols: cannot import name 'BETA' from 'pyworkflow' (/cssbsw/em/scipion/3.0/anaconda3/envs/.scipion3env/lib/python3.8/site-packages/pyworkflow/__init__.py) >>>> File "/cssbsw/em/scipion/3.0/anaconda3/envs/.scipion3env/lib/python3.8/site-packages/cryosparc2/protocols/protocol_cryosparc_global_ctf_refinement.py", line 33, in <module> >>>> Check the plugin manager (Configuration->Plugins in Scipion manager window) >>>> or use 'scipion installp --help --checkUpdates' in the command line to check for upgrades, >>>> it could be a versions compatibility issue. >>>> >>>> $ scipion3 update >>>> Scipion v3.0.7 - Eugenius >>>> The package scipion-pyworkflow is up to date. Your version is 3.0.9 >>>> The package scipion-em is up to date. Your version is 3.0.7 >>>> The package scipion-app is up to date. Your version is 3.0.7 >>>> >>>> i assume this has something to do with the recently updated workflow package and not with my yet not configured cryosparc configuration, right? >>>> >>>> cheers, >>>> wolfgang >>>> >>> -- >>> Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es/> team* >>> >>> >>> _______________________________________________ >>> scipion-users mailing list >>> sci...@li... >>> https://lists.sourceforge.net/lists/listinfo/scipion-users >> -- >> Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es/> team* >> _______________________________________________ >> scipion-users mailing list >> sci...@li... >> <mailto:sci...@li...> >> https://lists.sourceforge.net/lists/listinfo/scipion-users > -- Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team* |
